Likelihood Based Optimal Partitioning and Indicator Species Analysis

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Documentation for package ‘opticut’ version 0.1-2

• DESCRIPTION file.

Help Pages

opticut-package	Likelihood Based Optimal Partitioning and Indicator Species Analysis
allComb	Finding All Possible Binary Partitions
as.data.frame.multicut	Multi-level Response Model
as.data.frame.opticut	Optimal Binary Response Model
as.data.frame.summary.multicut	Multi-level Response Model
as.data.frame.summary.opticut	Optimal Binary Response Model
as.data.frame.summary.uncertainty	Quantifying Uncertainty for Fitted Objects
as.data.frame.uncertainty	Quantifying Uncertainty for Fitted Objects
bestmodel	Best model, Partition, and MLE
bestmodel.multicut	Multi-level Response Model
bestmodel.opticut	Optimal Binary Response Model
bestmodel.optilevels	Optimal Number of Factor Levels
bestpart	Best model, Partition, and MLE
bestpart.multicut	Multi-level Response Model
bestpart.opticut	Optimal Binary Response Model
bestpart.uncertainty	Quantifying Uncertainty for Fitted Objects
bestpart.uncertainty1	Quantifying Uncertainty for Fitted Objects
beta2i	Scaling for the Indicator Potential
birdrec	Bird Species Detections
bsmooth	Quantifying Uncertainty for Fitted Objects
bsmooth.uncertainty	Quantifying Uncertainty for Fitted Objects
bsmooth.uncertainty1	Quantifying Uncertainty for Fitted Objects
checkComb	Finding All Possible Binary Partitions
check_strata	Quantifying Uncertainty for Fitted Objects
col2gray	Color Palettes for the opticut Package
dolina	Land Snail Data Set
fitted.multicut	Multi-level Response Model
fitted.opticut	Optimal Binary Response Model
fix_levels	Optimal Binary Response Model
getMLE	Best model, Partition, and MLE
getMLE.multicut	Multi-level Response Model
getMLE.opticut	Optimal Binary Response Model
iquantile	Lorenz Curve Based Thresholds and Partitions
iquantile.lorenz	Lorenz Curve Based Thresholds and Partitions
kComb	Finding All Possible Binary Partitions
lcplot	Multi-level Response Model
lcplot.multicut1	Multi-level Response Model
lorenz	Lorenz Curve Based Thresholds and Partitions
multicut	Multi-level Response Model
multicut.default	Multi-level Response Model
multicut.formula	Multi-level Response Model
multicut1	Multi-level Response Model
occolors	Color Palettes for the opticut Package
oComb	Ranking Based Binary Partitions
ocoptions	Options for the opticut Package
opticut	Optimal Binary Response Model
opticut.default	Optimal Binary Response Model
opticut.formula	Optimal Binary Response Model
opticut1	Optimal Binary Response Model
optilevels	Optimal Number of Factor Levels
plot.lorenz	Lorenz Curve Based Thresholds and Partitions
plot.multicut	Multi-level Response Model
plot.multicut1	Multi-level Response Model
plot.opticut	Optimal Binary Response Model
predict.multicut	Multi-level Response Model
predict.opticut	Optimal Binary Response Model
print.multicut	Multi-level Response Model
print.multicut1	Multi-level Response Model
print.opticut	Optimal Binary Response Model
print.opticut1	Optimal Binary Response Model
print.summary.lorenz	Lorenz Curve Based Thresholds and Partitions
print.summary.multicut	Multi-level Response Model
print.summary.opticut	Optimal Binary Response Model
print.summary.uncertainty	Quantifying Uncertainty for Fitted Objects
print.uncertainty	Quantifying Uncertainty for Fitted Objects
print.uncertainty1	Quantifying Uncertainty for Fitted Objects
quantile.lorenz	Lorenz Curve Based Thresholds and Partitions
rankComb	Ranking Based Binary Partitions
strata	Optimal Binary Response Model
strata.multicut	Multi-level Response Model
strata.opticut	Optimal Binary Response Model
strata.uncertainty	Quantifying Uncertainty for Fitted Objects
subset.multicut	Multi-level Response Model
subset.opticut	Optimal Binary Response Model
subset.uncertainty	Quantifying Uncertainty for Fitted Objects
summary.lorenz	Lorenz Curve Based Thresholds and Partitions
summary.multicut	Multi-level Response Model
summary.opticut	Optimal Binary Response Model
summary.uncertainty	Quantifying Uncertainty for Fitted Objects
uncertainty	Quantifying Uncertainty for Fitted Objects
uncertainty.multicut	Quantifying Uncertainty for Fitted Objects
uncertainty.opticut	Quantifying Uncertainty for Fitted Objects
wplot	Optimal Binary Response Model
wplot.opticut	Optimal Binary Response Model
wplot.opticut1	Optimal Binary Response Model