adaptive_burnin_filter |
Calculate adaptive burn-in retain/discard list |
calculate_curve |
Calculate cumulative decay percent curve |
cuperdec_database_ex |
Example isolation source database input for cuperdec |
cuperdec_metadata_ex |
Example metadata file input for cuperdec |
cuperdec_taxatable_ex |
Example taxon table input for cuperdec |
hard_burnin_filter |
Calculate hard burn-in retain/discard list |
load_database |
Load database |
load_map |
Load metadata table |
load_taxa_table |
Load OTU table |
plot_cuperdec |
Plot cumulative percent decay curves |
simple_filter |
Apply simple percentage filter |