as_character_formula |
Read formula with as.character without splitting |
as_sparse |
Transforms matrix to dgTMatrix |
bdiag_check |
Create block diagonal matrix (safe version) |
cov_grid |
Grid of covariates |
Dist |
R6 class for probability distribution |
find_re |
Find s(, bs = "re") terms in formula |
HMM |
R6 class for hidden Markov model |
hmmTMB_cols |
hmmTMB colour palette |
invmlogit |
Multivarite inverse logit function |
is_whole_number |
Check if number of whole number |
logLik.HMM |
logLik function for SDE objects |
logsumexp |
Log of sum of exponentials |
make_formulas |
Process formulas and store in nested list |
make_matrices |
Create model matrices |
MarkovChain |
R6 class for HMM hidden process model |
mlogit |
Multivariate logit function |
mvnorm_invlink |
Multivariate Normal inverse link function |
mvnorm_link |
Multivariate Normal link function |
na_fill |
Fill in NAs |
Observation |
R6 class for HMM observation model |
prec_to_cov |
Get covariance matrix from precision matrix |
quad_pos_solve |
Solve for positive root of quadratic ax^2 + bx + c = 0 when it exists |
strip_comments |
Strip comments marked with a hash from a character vector |
update.HMM |
Update a model to a new model by changing one formula |