Signature Overrepresentation Analysis

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Documentation for package ‘sigora’ version 3.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

genesFromRandomPathways	Function to randomly select genes associated with randomly pathways.
getGenes	List genes involved in present GPS for a specific pathway in the summary_results
getURL	Highlight the relevant genes for a specific pathway in its pathway diagram
idmap	Identifier mappings for protein coding genes.
kegH	Pathway GPS data, extracted from KEGG repository (Human).
kegM	Pathway GPS data, extracted from KEGG repository (Mouse).
load_data	load and return data when lazyLoad false insted of using data(datastr)
makeGPS	Create your own Signature Object.
nciTable	NCI human gene-pathway associations.
ora	Traditional Overrepresentation Analysis.
reaH	Pathway GPS data, extracted from the Reactome repository (Human).
reaM	Pathway GPS data, extracted from Reactome repository (Mouse).
sigora	Sigora's main function.