Clustering and Visualizing Distance Matrices

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Documentation for package ‘Mercator’ version 1.1.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

addVisualization	The 'Mercator' Distance Visualization Object
barplot-method	The 'Mercator' Distance Visualization Object
binaryDistance	Binary Distance Definitions Across Methods
BinaryMatrix	Class '"BinaryMatrix"'
BinaryMatrix-class	Class '"BinaryMatrix"'
CML1000	CML Cytogenetic Data
CML500	CML Cytogenetic Data
dim-method	The 'Mercator' Distance Visualization Object
dim-method	Class '"BinaryMatrix"'
downsample	Downsampling a Distance Visualization to Facilitate iGraph
fakeclin	CML Cytogenetic Data
fakedata	CML Cytogenetic Data
getClusters	The 'Mercator' Distance Visualization Object
goodmanKruskalDistance	Binary Distance Definitions Across Methods
goodmanKruskalSimilarity	Binary Distance Definitions Across Methods
hammingDistance	Binary Distance Definitions Across Methods
hist-method	The 'Mercator' Distance Visualization Object
hist-method	Class '"BinaryMatrix"'
jaccardDistance	Binary Distance Definitions Across Methods
jaccardSimilarity	Binary Distance Definitions Across Methods
lgfFeatures	CML Cytogenetic Data
Mercator	The 'Mercator' Distance Visualization Object
Mercator-class	The 'Mercator' Distance Visualization Object
mercator-data	CML Cytogenetic Data
pearsonDistance	Binary Distance Definitions Across Methods
pearsonSimilarity	Binary Distance Definitions Across Methods
plot-method	The 'Mercator' Distance Visualization Object
print-method	Class '"BinaryMatrix"'
recluster	Changing Cluster and Color Assignments in Mercator
recolor	Changing Cluster and Color Assignments in Mercator
remapColors	Changing Cluster and Color Assignments in Mercator
removeDuplicateFeatures	Remove Duplicate Features or Samples from a Binary Matrix Object
removeDuplicates	Remove Duplicate Features or Samples from a Binary Matrix Object
russellRaoSimilarity	Binary Distance Definitions Across Methods
russelRaoDistance	Binary Distance Definitions Across Methods
scatter-method	The 'Mercator' Distance Visualization Object
setClusters	Changing Cluster and Color Assignments in Mercator
show-method	Class '"BinaryMatrix"'
sokalMichenerDistance	Binary Distance Definitions Across Methods
sokalMichenerSimilarity	Binary Distance Definitions Across Methods
summary-method	The 'Mercator' Distance Visualization Object
summary-method	Class '"BinaryMatrix"'
t-method	Class '"BinaryMatrix"'
ThreshedBinaryMatrix	Threshing and Reaping the 'BinaryMatrix'
ThreshedBinaryMatrix-class	Threshing and Reaping the 'BinaryMatrix'
threshLGF	Threshing and Reaping the 'BinaryMatrix'
validBinaryMatrix	Class '"BinaryMatrix"'
[-method	The 'Mercator' Distance Visualization Object
[-method	Class '"BinaryMatrix"'