Automated C Code Generation for 'deSolve', 'bvpSolve'


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Documentation for package ‘cOde’ version 1.0.0

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adjointSymb Compute adjoint equations of a function symbolically
bvptwpC Interface to bvptwp()
compileAndLoad Compile and load shared object implementing the ODE system.
forcData Forcings data.frame
funC Generate C code for a function and compile it
getSymbols Get symbols from a character
jacobianSymb Compute Jacobian of a function symbolically
odeC Interface to ode()
oxygenData Time-course data of O, O2 and O3
prodSymb Compute matrix product symbolically
reduceSensitivities reduceSensitivities
replaceNumbers Replace integer number in a character vector by other double
replaceOperation Replace a binary operator in a string by a function
replaceSymbols Replace symbols in a character vector by other symbols
sensitivitiesSymb Compute sensitivity equations of a function symbolically
setForcings Generate interpolation spline for the forcings and write into list of matrices
sumSymb Compute matrix sumSymbolically