addAccessRule |
Add access rules to the specified object. |
addAccessRule-method |
Add access rules to the specified object. |
addData |
Add a DataObject to the DataPackage |
addData-method |
Add a DataObject to the DataPackage |
addMember |
Add a DataObject to the DataPackage |
addMember-method |
Add a DataObject to the DataPackage |
calculateChecksum |
Calculate a checksum for the DataObject using the specified checksum algorithm |
calculateChecksum-method |
Calculate a checksum for the DataObject using the specified checksum algorithm |
canRead |
Test whether the provided subject can read an object. |
canRead-method |
Test whether the provided subject can read an object. |
clearAccessPolicy |
Clear the accessPolicy from the specified object. |
clearAccessPolicy-method |
Clear the accessPolicy from the specified object. |
containsId |
Returns true if the specified object is a member of the package |
containsId-method |
Returns true if the specified object is a member of the package |
createFromTriples |
Populate a ResourceMap with RDF relationships from data.frame. |
createFromTriples-method |
Populate a ResourceMap with RDF relationships from data.frame. |
DataObject-class |
DataObject wraps raw data with system-level metadata |
DataObject-initialize |
Initialize a DataObject |
datapack |
datapack, a container for packages of data and associated metadata |
DataPackage-class |
A class representing a data package |
DataPackage-initialize |
Initialize a DataPackage object. |
describeWorkflow |
Add data derivation information to a DataPackage |
describeWorkflow-method |
Add data derivation information to a DataPackage |
dmsg |
Print a debugging message to stderr. |
freeResourceMap |
Free memory used by a ResouceMap. |
freeResourceMap-method |
Free memory used by a ResouceMap. |
getData |
Get the data content of a specified data object |
getData-method |
Get the data content of a specified data object |
getFormatId |
Get the FormatId of the DataObject |
getFormatId-method |
Get the FormatId of the DataObject |
getIdentifier |
Get the Identifier of the DataObject |
getIdentifier-method |
Get the Identifier of the DataObject |
getIdentifiers |
Get the Identifiers of Package Members |
getIdentifiers-method |
Get the Identifiers of Package Members |
getMember |
Return the Package Member by Identifier |
getMember-method |
Return the Package Member by Identifier |
getRelationships |
Retrieve relationships of package objects |
getRelationships-method |
Retrieve relationships of package objects |
getSize |
Get the Count of Objects in the Package |
getSize-method |
Get the Count of Objects in the Package |
getTriples |
Get the RDF relationships stored in the ResourceMap. |
getTriples-method |
Get the RDF relationships stored in the ResourceMap. |
getValue |
Get values for selected DataPackage members. |
getValue-method |
Get values for selected DataPackage members. |
hasAccessRule |
Determine if an access rules exists |
hasAccessRule-method |
Determine if an access rules exists |
initialize-method |
Initialize a DataObject |
initialize-method |
Initialize a DataPackage object. |
initialize-method |
Initialize a ResourceMap object. |
initialize-method |
Initialize a DataONE SystemMetadata object with default values or values passed in to the constructor. |
insertRelationship |
Record relationships of objects in a DataPackage |
insertRelationship-method |
Record relationships of objects in a DataPackage |
parseRDF |
Parse an RDF/XML resource map from a file. |
parseRDF-method |
Parse an RDF/XML resource map from a file. |
parseSystemMetadata |
Parse an external XML document and populate a SystemMetadata object with the parsed data |
parseSystemMetadata-method |
Parse an external XML document and populate a SystemMetadata object with the parsed data |
plotRelationships |
Plot derivation relationships obtained from getRelationships |
plotRelationships-method |
Plot derivation relationships obtained from getRelationships |
recordDerivation |
Record derivation relationships between objects in a DataPackage |
recordDerivation-method |
Record derivation relationships between objects in a DataPackage |
removeAccessRule |
Remove an access rule from the specified object. |
removeAccessRule-method |
Remove an access rule from the specified object. |
removeMember |
Remove the Specified Member from the Package |
removeMember-method |
Remove the Specified Member from the Package |
removeRelationships |
Remove relationships of objects in a DataPackage |
removeRelationships-method |
Remove relationships of objects in a DataPackage |
replaceMember |
Replace the raw data or file associated with a DataObject |
replaceMember-method |
Replace the raw data or file associated with a DataObject |
ResourceMap-class |
ResourceMap provides methods to create, serialize and deserialize an OAI ORE resource map. |
ResourceMap-initialize |
Initialize a ResourceMap object. |
selectMember |
Return identifiers for objects that match search criteria |
selectMember-method |
Return identifiers for objects that match search criteria |
serializePackage |
Create an OAI-ORE resource map from the package |
serializePackage-method |
Create an OAI-ORE resource map from the package |
serializeRDF |
Serialize a ResouceMap. |
serializeRDF-method |
Serialize a ResouceMap. |
serializeSystemMetadata |
Serialize a SystemMetadata object to an XML representation |
serializeSystemMetadata-method |
Serialize a SystemMetadata object to an XML representation |
serializeToBagIt |
Serialize A DataPackage into a BagIt Archive File |
serializeToBagIt-method |
Serialize A DataPackage into a BagIt Archive File |
setPublicAccess |
Add a Rule to the AccessPolicy to make the object publicly readable. |
setPublicAccess-method |
Add a Rule to the AccessPolicy to make the object publicly readable. |
setValue |
Set values for selected DataPackage members. |
setValue-method |
Set values for selected DataPackage members. |
SystemMetadata |
Create DataONE SystemMetadata object |
SystemMetadata-class |
A DataONE SystemMetadata object containing basic identification, ownership, access policy, replication policy, and related metadata. |
SystemMetadata-initialize |
Initialize a DataONE SystemMetadata object with default values or values passed in to the constructor. |
SystemMetadata-method |
Create DataONE SystemMetadata object |
updateMetadata |
Update selected elements of the XML content of a DataObject in a DataPackage (aka package member). |
updateMetadata-method |
Update selected elements of the XML content of a DataObject in a DataPackage (aka package member). |
updateRelationships |
Update package relationships by replacing an old identifier with a new one. |
updateRelationships-method |
Update package relationships by replacing an old identifier with a new one. |
updateXML |
Update selected elements of the XML content of a DataObject |
updateXML-method |
Update selected elements of the XML content of a DataObject |
validate |
Validate a SystemMetadata object. |
validate-method |
Validate a SystemMetadata object. |