Nested Association Mapping

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Documentation for package ‘NAM’ version 1.7.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Code demos. Use demo() to run them.

Help Pages

NAM-package	Nested Association Mapping
BCpi	Internal functions
ben	Genome-wide prediction
BRR2	Internal functions
calcSize	Internal functions
chr	Tetra-seed Pods
cleanREP	SNP Quality Control
CNT	Internal functions
covar	Internal functions
eigX	Internal functions
emBA	Internal functions
emBB	Internal functions
emBC	Internal functions
emBD	Internal functions
emBL	Internal functions
emCV	Internal functions
emDE	Internal functions
emEN	Internal functions
emGWA	Internal functions
emML	Internal functions
emML2	Internal functions
emMX	Internal functions
emRR	Internal functions
fam	Tetra-seed Pods
Fst	Fixation Index
funI	Internal functions
funX	Internal functions
G2A_Kernels	Internal functions
GAU	Internal functions
Gdist	Internal functions
Gen	Multi-environmental trial
gen	Tetra-seed Pods
gibbs	Bayesian Mixed Model
gibbs2	Bayesian Mixed Model
gmm	Genomic mixed model
GRM	Internal functions
gs	Internal functions
gwas	Empirical Bayes Genome Wide Association Mapping
gwas2	Empirical Bayes Genome Wide Association Mapping
gwas3	Empirical Bayes Genome Wide Association Mapping
gwasGE	Empirical Bayes Genome Wide Association Mapping
IMP	Internal functions
Import_data	Internal functions
inputRow	Internal functions
KMUP	Internal functions
KMUP2	Internal functions
LD	Internal functions
markov	Internal functions
MCreml	Restricted Maximum Likelihood
met	Multi-environmental trial
meta3	Empirical Bayes Genome Wide Association Mapping
mkr	Internal functions
mkr2X	Internal functions
ml	Bayesian Mixed Model
mrr	Internal functions
mrr2X	Internal functions
mrrFast	Internal functions
mrrV2	Internal functions
MSX	Internal functions
NAM	Nested Association Mapping
NNcov	Internal functions
NNsrc	Internal functions
NOR	Internal functions
Obs	Multi-environmental trial
PedMat	Internal functions
PedMat2	Internal functions
plot.fst	Fixation Index
plot.gibbs	Bayesian Mixed Model
plot.H2	SNP heritability
plot.NAM	Manhattan plot for Association Studies
press	Internal functions
RcppExports	Internal functions
reference	SNP Quality Control
reml	Restricted Maximum Likelihood
SAMP	Internal functions
SAMP2	Internal functions
snpH2	SNP heritability
snpQC	SNP Quality Control
SPC	Internal functions
SPM	Internal functions
timesMatrix	Internal functions
timesVec	Internal functions
tpod	Tetra-seed Pods
wgr	Genome-wide prediction
y	Tetra-seed Pods