Partitioning Beta Diversity into Turnover and Nestedness Components


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Documentation for package ‘betapart’ version 1.5.4

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betapart-package Partitioning beta diversity into turnover and nestedness components
bbs1980 BBS data by state for two timeslices
bbs2000 BBS data by state for two timeslices
bbsData BBS data by state for two timeslices
beta.multi Multiple-site dissimilarities
beta.multi.abund Abundance-based multiple-site dissimilarities
beta.pair Incidence-based pair-wise dissimilarities
beta.pair.abund Abundance-based pair-wise dissimilarities
beta.para.control Specifying Control Values for Internal Parallel Cluster
beta.sample Resampling multiple-site dissimilarity for n sites
beta.sample.abund Resampling abundance-based multiple-site dissimilarity for n sites
beta.temp Temporal change in community composition
betapart Partitioning beta diversity into turnover and nestedness components
betapart.core Core calculations of betapart
betapart.core.abund Core calculations of betapart for abundance-based dissimilarity measures
betatest A data set of 4 communities, 107 species and a 4D functional space
boot.coefs.decay Bootstrapping the parameters of distance-decay models computed with decay.model()
bray.part Partitioning pair-wise Bray-Curtis dissimilarities
ceram.n Cerambycidae from Northern European Countries
ceram.s Cerambycidae from Southern European Countries
decay.model Fitting distance decay models to pair-wise assemblage similarity
functional.beta.multi Multiple-site functional dissimilarities
functional.beta.pair Pair-wise functional dissimilarities
functional.betapart.core Core calculations of functional dissimilarities metrics
functional.betapart.core.pairwise functional.betapart.core.pairwise
inter_geom Internal function to compute convexhull volume
inter_geom_coord Internal function to compute convexhull volume and vertice coordinates
inter_rcdd Internal function to compute convexhull volume
inter_rcdd_coord Internal function to compute convexhull volume and vertice coordinates
phylo.beta.multi Multiple-site phylogenetic dissimilarities
phylo.beta.pair Pair-wise phylogenetic dissimilarities
phylo.betapart.core Core calculations of phylogenetic dissimilarities metrics
plot.decay Plotting distance decay curves from models computed with decay.model()
qhull.opt Specifying control Values for convexhull volume estimation