compare_daa_results |
Compare the Consistency of Statistically Significant Features |
compare_metagenome_results |
Compare Metagenome Results |
daa_annotated_results_df |
Differentially Abundant Analysis Results with Annotation |
daa_results_df |
DAA Results Dataset |
ggpicrust2 |
This function integrates pathway name/description annotations, ten of the most advanced differential abundance (DA) methods, and visualization of DA results. |
import_MicrobiomeAnalyst_daa_results |
Import Differential Abundance Analysis (DAA) results from MicrobiomeAnalyst |
kegg_abundance |
KEGG Abundance Dataset |
ko2kegg_abundance |
Convert KO abundance in picrust2 export files to KEGG pathway abundance |
ko_abundance |
KO Abundance Dataset |
metacyc_abundance |
MetaCyc Abundance Dataset |
metadata |
Metadata for ggpicrust2 Demonstration |
pathway_annotation |
Pathway information annotation of "EC", "KO", "MetaCyc" pathway |
pathway_daa |
Predictional functional patwhay differential abundance (DA) |
pathway_errorbar |
The function pathway_errorbar() is used to visualize the results of functional pathway differential abundance analysis as error bar plots. |
pathway_heatmap |
Create pathway heatmap |
pathway_pca |
Perform Principal Component Analysis (PCA) on functional pathway abundance data and create visualizations of the PCA results. |