Query the Breeding Management System(s)
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Documentation for package ‘QBMS’ version 1.0.0
Help Pages
| brapi_get_call | Internal Function Used for Core BrAPI GET Calls |
| brapi_headers | Common HTTP Headers to Send |
| build_pedigree_table | Building Pedigree Table Recursively |
| calc_biovars | Calculate the Bioclimatic Variables |
| debug_qbms | Debug Internal QBMS Status Object |
| get_async_page | Async Version of HTTP GET Request |
| get_async_pages | Run All Supplied Pages |
| get_germplasm_attributes | Retrieve Attributes for a Specified Germplasm |
| get_germplasm_data | Retrieve Observations Data for a Specified Germplasm. |
| get_germplasm_id | Get Germplasm ID |
| get_germplasm_list | Get the Germplasm List of the Current Active Study |
| get_hwsd2 | Get HWSD v2 Soil Data for a Given Location(s) |
| get_login_details | Login Pop-Up Window |
| get_parents | Get Direct Parents |
| get_pedigree_table | Get the Pedigree Table |
| get_program_studies | Get the List of Trials/Studies/Locations Information of the Current Selected Program |
| get_program_trials | Internal Function Used to Retrieve the Rough List of Trials |
| get_qbms_connection | Get the QBMS Connection |
| get_study_data | Get the Observations Data of the Current Active Study |
| get_study_info | Get the Details/Metadata of the Current Active Study |
| get_terraclimate | Get TerraClimate Data for a Given Coordinate(s) |
| get_trial_data | Get the Observations Data of the Current Active Trial |
| get_trial_obs_ontology | Get the Traits Ontology/Metadata of the Current Active Trial |
| gigwa_get_metadata | Get the Metadata of the Current Active GIGWA Run |
| gigwa_get_samples | Get the Samples List of the Current Active GIGWA Run |
| gigwa_get_variants | Get Available Variants in the Selected GIGWA Run |
| gigwa_list_dbs | List GIGWA Databases |
| gigwa_list_projects | Get the List of All Projects in the Selected GIGWA Database |
| gigwa_list_runs | Get the List of the Run Names Available in the Selected GIGWA Project |
| gigwa_set_db | Set the Current Active GIGWA Database by Name |
| gigwa_set_project | Set the Current Active GIGWA Project |
| gigwa_set_run | Set the Current Active GIGWA Run |
| ini_hwsd2 | Download and Setup HWSD v2.0 Data Files to Extract their Data Offline |
| ini_terraclimate | Download TerraClimate netCDF Data Files to Extract their Data Offline |
| list_crops | Get the List of Supported Crops |
| list_locations | Get the List of Locations Information of the Current Selected Crop |
| list_programs | Get the List of Breeding Programs Names |
| list_studies | Get the List of Studies in the Current Active Trial |
| list_trials | Get the List of Trials in the Current Active Breeding Program |
| login_bms | Login to the Server |
| login_breedbase | Login to the BreedBase Server |
| login_gigwa | Login to the GIGWA Server |
| login_oauth2 | Login Using OAuth 2.0 Authentication |
| rbindlistx | Make One Data.Table from a List of Many |
| rbindx | Combine Data Frames by Row, Filling in Missing Columns |
| scan_brapi_endpoints | Scan BrAPI Endpoints |
| set_crop | Set the Current Active Crop |
| set_program | Set the Current Active Breeding Program |
| set_qbms_config | Configure BMS Server Settings |
| set_qbms_connection | Set the QBMS Connection |
| set_study | Set the Current Active Study |
| set_token | Set Access Token Response |
| set_trial | Set the Current Active Trial |