Interface to the 'OpenBUGS' MCMC Software
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Documentation for package ‘BRugs’ version 0.9-2.1
Help Pages
| BRugs | Introduction to BRugs |
| BRugsFit | BRugs' meta function |
| bugsData | Writing input for OpenBUGS |
| bugsInits | Writing input for OpenBUGS |
| buildMCMC | Generating mcmc.list objects for package coda |
| dicClear | DIC |
| dicSet | DIC |
| dicStats | DIC |
| getNumChains | Number of chains |
| help.BRugs | Introduction to BRugs |
| help.WinBUGS | WinBUGS documentation |
| infoMemory | Show memory usage |
| infoModules | Loaded modules |
| infoNodeMethods | Node information |
| infoNodeTypes | Node information |
| infoNodeValues | Node information |
| infoUpdatersbyDepth | Information on MCMC updaters |
| infoUpdatersbyName | Information on MCMC updaters |
| loadOpenBUGS | Load OpenBUGS from given directory |
| modelAdaptivePhase | Getting length of adaptive phase |
| modelCheck | Checking the model file |
| modelCompile | Compiling the model |
| modelData | Loading the data |
| modelDisable | Enable and disable factories to create updaters |
| modelEnable | Enable and disable factories to create updaters |
| modelGenInits | Generating initial values |
| modelInits | Loading initial values |
| modelIteration | Returns number of iterations |
| modelNames | Get variable names in model |
| modelPrecision | Setting precision for prec figures |
| modelSaveState | Save the model's current state |
| modelSetAP | Changing settings of updating algorithms |
| modelSetIts | Changing settings of updating algorithms |
| modelSetOR | Changing settings of updating algorithms |
| modelSetRN | State of Random Number Generator |
| modelSetWD | Set working directory |
| modelUpdate | Updating the model |
| plotAutoC | Plot autocorrelation function for a scalar variable |
| plotBgr | Plot the Gelman-Rubin convergence statistic for a scalar variable |
| plotDensity | Plot density estimate or histogram of a scalar variable |
| plotHistory | Trace of a scalar variable |
| ranksClear | Calculation of ranks |
| ranksSet | Calculation of ranks |
| ranksStats | Calculation of ranks |
| ratsdata | ratsdata example |
| ratsinits | ratsdata example |
| samplesAutoC | Plot autocorrelation function |
| samplesBgr | Plot the Gelman-Rubin convergence statistic |
| samplesClear | Clear recorded values |
| samplesCoda | Writing files in CODA format |
| samplesCorrel | Correlation |
| samplesDensity | Plot density estimate or histogram |
| samplesGetBeg | Get settings used for calculations |
| samplesGetEnd | Get settings used for calculations |
| samplesGetFirstChain | Get settings used for calculations |
| samplesGetLastChain | Get settings used for calculations |
| samplesGetThin | Get settings used for calculations |
| samplesHistory | Trace of a variable |
| samplesMonitors | Names of monitored scalar variables |
| samplesSample | Stored values |
| samplesSet | Start recording |
| samplesSetBeg | Change settings used for calculations |
| samplesSetEnd | Change settings used for calculations |
| samplesSetFirstChain | Change settings used for calculations |
| samplesSetLastChain | Change settings used for calculations |
| samplesSetThin | Change settings used for calculations |
| samplesSize | Size of the stored sample |
| samplesStats | Calculate summary statistics |
| setValues | Setting current values |
| summaryClear | Summary of MCMC simulation |
| summarySet | Summary of MCMC simulation |
| summaryStats | Summary of MCMC simulation |
| writeModel | Creating an OpenBUGS model file |