Interface to the 'OpenBUGS' MCMC Software


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Documentation for package ‘BRugs’ version 0.9-1

Help Pages

BRugs Introduction to BRugs
BRugsFit BRugs' meta function
bugsData Writing input for OpenBUGS
bugsInits Writing input for OpenBUGS
buildMCMC Generating mcmc.list objects for package coda
dicClear DIC
dicSet DIC
dicStats DIC
getNumChains Number of chains
help.BRugs Introduction to BRugs
help.WinBUGS WinBUGS documentation
infoMemory Show memory usage
infoModules Loaded modules
infoNodeMethods Node information
infoNodeTypes Node information
infoNodeValues Node information
infoUpdatersbyDepth Information on MCMC updaters
infoUpdatersbyName Information on MCMC updaters
loadOpenBUGS Load OpenBUGS from given directory
modelAdaptivePhase Getting length of adaptive phase
modelCheck Checking the model file
modelCompile Compiling the model
modelData Loading the data
modelDisable Enable and disable factories to create updaters
modelEnable Enable and disable factories to create updaters
modelGenInits Generating initial values
modelInits Loading initial values
modelIteration Returns number of iterations
modelNames Get variable names in model
modelPrecision Setting precision for prec figures
modelSaveState Save the model's current state
modelSetAP Changing settings of updating algorithms
modelSetIts Changing settings of updating algorithms
modelSetOR Changing settings of updating algorithms
modelSetRN State of Random Number Generator
modelSetWD Set working directory
modelUpdate Updating the model
plotAutoC Plot autocorrelation function for a scalar variable
plotBgr Plot the Gelman-Rubin convergence statistic for a scalar variable
plotDensity Plot density estimate or histogram of a scalar variable
plotHistory Trace of a scalar variable
ranksClear Calculation of ranks
ranksSet Calculation of ranks
ranksStats Calculation of ranks
ratsdata ratsdata example
ratsinits ratsdata example
samplesAutoC Plot autocorrelation function
samplesBgr Plot the Gelman-Rubin convergence statistic
samplesClear Clear recorded values
samplesCoda Writing files in CODA format
samplesCorrel Correlation
samplesDensity Plot density estimate or histogram
samplesGetBeg Get settings used for calculations
samplesGetEnd Get settings used for calculations
samplesGetFirstChain Get settings used for calculations
samplesGetLastChain Get settings used for calculations
samplesGetThin Get settings used for calculations
samplesHistory Trace of a variable
samplesMonitors Names of monitored scalar variables
samplesSample Stored values
samplesSet Start recording
samplesSetBeg Change settings used for calculations
samplesSetEnd Change settings used for calculations
samplesSetFirstChain Change settings used for calculations
samplesSetLastChain Change settings used for calculations
samplesSetThin Change settings used for calculations
samplesSize Size of the stored sample
samplesStats Calculate summary statistics
setValues Setting current values
summaryClear Summary of MCMC simulation
summarySet Summary of MCMC simulation
summaryStats Summary of MCMC simulation
writeModel Creating an OpenBUGS model file