degreeDistBP |
Degree distribution of the GO biological process (BP) terms on a GO-level |
degreeDistCC |
Degree distribution of the GO cellular component (CC) terms on a GO level |
degreeDistMF |
Degree distribution of the GO molecular function (MF) terms on a GO-level |
distRankingGO |
Provides ranking of GO-terms according to distance |
Gene2GOTermAndLevel |
Get the Gene Ontology (GO) terms associated with a gene(s) and their levels |
Gene2GOTermAndLevel_ON |
Get the Gene Ontology (GO) terms associated with a gene(s) and their levels |
GetDAG |
Organism-specific GO-DAG edgelist |
getGOcategory |
GO-term category getter |
GetLeafNodesBP |
All the BP GO-DAG leaf nodes |
GetLeafNodesCC |
All the CC GO-DAG leaf nodes |
GetLeafNodesMF |
All the MF GO-DAG leaf nodes |
GO2DecBP |
GO biological process (BP) descendant GO-terms as an Edgelist |
GO2DecCC |
GO cellular component (CC) descendant GO-terms as an Edgelist |
GO2DecMF |
GO molecular function (MF) descendant GO-terms as an Edgelist |
GO4Organism |
All gene association GO-terms for an organism |
GOTermBP2ChildLevel |
Get the level of a biological process (BP) GO term's children |
GOTermBPOnLevel |
GO biological process (BP) terms level getter |
GOTermCC2ChildLevel |
Get the level of a cellular component (CC) GO term's children |
GOTermCCOnLevel |
GO cellular component (CC) terms level getter |
GOTermMF2ChildLevel |
Get the level of a molecular function (MF) GO term's children |
GOTermMFOnLevel |
GO molecular function (MF) term level getter |
Level2GOTermBP |
GO biological process (BP) terms on a level |
Level2GOTermCC |
GO cellular component (CC) terms on a level |
Level2GOTermMF |
GO molecular function (MF) terms on a level |
Level2JumpNodeBP |
Jump nodes from a GO BP level |
Level2JumpNodeCC |
Jump nodes from a GO CC level |
Level2JumpNodeMF |
Jump nodes from a GO MF level |
Level2LeafNodeBP |
GO biological process (BP) level leaf nodes getter |
Level2LeafNodeCC |
GO cellular component (CC) level leaf nodes getter |
Level2LeafNodeMF |
GO molecular function (MF) level leaf nodes getter |
Level2NoLeafNodeBP |
Non-leaf GO-terms on a GO BP level |
Level2NoLeafNodeCC |
Non-leaf GO-terms on a GO CC level |
Level2NoLeafNodeMF |
Non-leaf GO-terms on a GO MF level |
Level2RegularNodeBP |
Regular nodes from a GO BP level |
Level2RegularNodeCC |
Regular nodes from a GO CC level |
Level2RegularNodeMF |
Regular nodes from a GO MF level |
prioritizedGOTerms |
prioritization of a lists of GO-terms |
scoreRankingGO |
Provides ranking of GO-terms according to a score |
visRDAGBP |
Species-specific biological process GO-DAG |
visRDAGCC |
Species-specific cellular component GO-DAG |
visRDAGMF |
Species-specific molecular function GO-DAG |
visRsubDAGBP |
Visualise the GO-DAG for a specific organism based on certain GO-terms |
visRsubDAGCC |
Visualise the GO-DAG for a specific organism based on certain GO-terms |
visRsubDAGMF |
Visualise the GO-DAG for a specific organism based on certain GO-terms |