Simulation-Based Inference Methods for Infectious Disease Models
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Documentation for package ‘SimBIID’ version 0.2.1
Help Pages
| SimBIID-package | Simulation-based inference for infectious disease models |
| ABCRef | Produces ABC reference table |
| ABCSMC | Runs ABC-SMC algorithm |
| ABCSMC.ABCSMC | Runs ABC-SMC algorithm |
| ABCSMC.default | Runs ABC-SMC algorithm |
| compileRcpp | Compiles 'SimBIID_model' object |
| ebola | Time series counts of ebola cases |
| mparseRcpp | Parse custom model using 'SimInf' style markup |
| plot.ABCSMC | Plots 'ABCSMC' objects |
| plot.PMCMC | Plots 'PMCMC' objects |
| plot.SimBIID_runs | Plots 'SimBIID_runs' objects |
| PMCMC | Runs particle MCMC algorithm |
| PMCMC.default | Runs particle MCMC algorithm |
| PMCMC.PMCMC | Runs particle MCMC algorithm |
| predict.PMCMC | Predicts future course of outbreak from 'PMCMC' objects |
| print.ABCSMC | Prints 'ABCSMC' objects |
| print.PMCMC | Prints 'PMCMC' objects |
| print.SimBIID_model | Prints 'SimBIID_model' objects |
| print.SimBIID_runs | Prints 'SimBIID_runs' objects |
| run | Runs 'SimBIID_model' object |
| smallpox | Time series counts of smallpox cases |
| summary.ABCSMC | Summarises 'ABCSMC' objects |
| summary.PMCMC | Summarises 'PMCMC' objects |
| window.PMCMC | Time windows for 'PMCMC' objects |