SimBIID-package |
Simulation-based inference for infectious disease models |
ABCRef |
Produces ABC reference table |
ABCSMC |
Runs ABC-SMC algorithm |
ABCSMC.ABCSMC |
Runs ABC-SMC algorithm |
ABCSMC.default |
Runs ABC-SMC algorithm |
compileRcpp |
Compiles 'SimBIID_model' object |
ebola |
Time series counts of ebola cases |
mparseRcpp |
Parse custom model using 'SimInf' style markup |
plot.ABCSMC |
Plots 'ABCSMC' objects |
plot.PMCMC |
Plots 'PMCMC' objects |
plot.SimBIID_runs |
Plots 'SimBIID_runs' objects |
PMCMC |
Runs particle MCMC algorithm |
PMCMC.default |
Runs particle MCMC algorithm |
PMCMC.PMCMC |
Runs particle MCMC algorithm |
predict.PMCMC |
Predicts future course of outbreak from 'PMCMC' objects |
print.ABCSMC |
Prints 'ABCSMC' objects |
print.PMCMC |
Prints 'PMCMC' objects |
print.SimBIID_model |
Prints 'SimBIID_model' objects |
print.SimBIID_runs |
Prints 'SimBIID_runs' objects |
run |
Runs 'SimBIID_model' object |
smallpox |
Time series counts of smallpox cases |
summary.ABCSMC |
Summarises 'ABCSMC' objects |
summary.PMCMC |
Summarises 'PMCMC' objects |
window.PMCMC |
Time windows for 'PMCMC' objects |