Streamline Population Genomic and Genetic Analyses

Documentation for package ‘PopGenHelpR’ version 1.2.1

Dif_stats	A function to calculate differentiation statistics and perform significance testing with a vcf file.
Dif_Stats_Map	A function to map differentiation statistics.
Div_stats	A function to estimate heterozygosity and the number of private alleles from a vcf file.
Div_Stats_Map	A function to map diversity statistics.
Fst_dat	A genetic differentiation matrix and locality information for each population. This data was generated by subsetting data of Farleigh et al., 2021.
Het_dat	A data frame of hypothetical heterozygosity data produced by Div_Stats.
HornedLizard_Pop	A population assignment data frame to be used in 'Div_stats' and 'Dif_stats'.
HornedLizard_VCF	A vcfR object to be used in 'Div_stats' and 'Dif_stats'.
Pairwise_heatmap	A function to plot a heatmap from a symmetric matrix.
Plot_ancestry	Plot an ancestry matrix and map of ancestry pie charts.
Q_dat	A list representing a q-matrix and the locality information associated with the qmatrix