Model Transport of Environmental DNA in River Networks

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Documentation for package ‘eDITH’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

eDITH-package	Model Transport of Environmental DNA In River Networks
dataC	eDNA concentration data
dataCD	eDNA concentration and direct observation data
dataRead	eDNA read number data
eDITH	Model Transport of Environmental DNA In River Networks
eval_posterior_eDITH	Evaluate posterior predictions from an eDITH run
outSample	Posterior sample from fitted eDITH model
posterior_pred_sim_eDITH	Predictive posterior simulations from an eDITH run
run_eDITH_BT	Run eDITH with BayesianTools
run_eDITH_BT_joint	Run eDITH with BayesianTools based on joint eDNA and direct sampling data
run_eDITH_optim	Optimize eDITH
run_eDITH_optim_joint	Optimize eDITH based on joint eDNA and direct sampling data
run_eDITH_single	Run eDITH for a single parameter set
sampling_strategy_direct	Determine optimal spatial arrangement for direct sampling
sampling_strategy_eDNA	Determine optimal spatial arrangement for eDNA sampling
wigger	River Wigger