Intensive Care Unit Data with R
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Documentation for package ‘ricu’ version 0.5.6
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A B C D E F G H I L M N P Q R S T U V W
-- A --
| aggregate.id_tbl | ICU class data utilities |
| anyDuplicated.id_tbl | ICU class data utilities |
| apply_map | Item callback utilities |
| as.data.frame.id_tbl | Tabular ICU data classes |
| as.data.table.id_tbl | Tabular ICU data classes |
| as_concept | Data Concepts |
| as_id_tbl | Tabular ICU data classes |
| as_item | Data items |
| as_ts_tbl | Tabular ICU data classes |
| as_win_tbl | Tabular ICU data classes |
| attach_src | Data attach utilities |
| attach_src.character | Data attach utilities |
| attach_src.src_cfg | Data attach utilities |
| aumc | ICU datasets |
| auto_attach_srcs | File system utilities |
| avpu | Concept callback functions |
-- B --
| binary_op | Item callback utilities |
| bmi | Concept callback functions |
-- C --
| change_dur_unit | ICU class data utilities |
| change_id | Switch between id types |
| change_interval | ICU class data utilities |
| collapse | Time series utility functions |
| comp_na | Item callback utilities |
| concept | Data Concepts |
| concept_availability | Load concept dictionaries |
| config_paths | File system utilities |
| convert_unit | Item callback utilities |
-- D --
| data | ICU datasets |
| data_col | ICU class meta data utilities |
| data_dir | File system utilities |
| data_var | ICU class meta data utilities |
| data_vars | ICU class meta data utilities |
| days | Utilities for 'difftime' |
| delta_cummin | Sepsis 3 label |
| delta_min | Sepsis 3 label |
| delta_start | Sepsis 3 label |
| detach_src | Data attach utilities |
| downgrade_id | Switch between id types |
| downgrade_id.id_tbl | Switch between id types |
| downgrade_id.ts_tbl | Switch between id types |
| download_src | Data download utilities |
| download_src.aumc_cfg | Data download utilities |
| download_src.character | Data download utilities |
| download_src.src_cfg | Data download utilities |
| dt_gforce | ICU class data utilities |
| duplicated.id_tbl | ICU class data utilities |
| dur_col | ICU class meta data utilities |
| dur_unit | ICU class meta data utilities |
| dur_var | ICU class meta data utilities |
-- E --
| eicu | ICU datasets |
| eicu_demo | ICU datasets |
| expand | Time series utility functions |
| explain_dictionary | Load concept dictionaries |
-- F --
| fill_gaps | Time series utility functions |
| first_elem | Utility functions |
| fmt_msg | Message signaling nested with progress reporting |
-- G --
| gcs | Concept callback functions |
| get_config | File system utilities |
-- H --
| has_gaps | Time series utility functions |
| has_no_gaps | Time series utility functions |
| hirid | ICU datasets |
| hop | Time series utility functions |
| hours | Utilities for 'difftime' |
-- I --
| id_col | ICU class meta data utilities |
| id_tbl | Tabular ICU data classes |
| id_var | ICU class meta data utilities |
| id_vars | ICU class meta data utilities |
| import_src | Data import utilities |
| import_src.aumc_cfg | Data import utilities |
| import_src.character | Data import utilities |
| import_src.src_cfg | Data import utilities |
| import_tbl | Data import utilities |
| import_tbl.tbl_cfg | Data import utilities |
| index_col | ICU class meta data utilities |
| index_var | ICU class meta data utilities |
| init_cncpt | Data Concepts |
| init_cncpt.cncpt | Data Concepts |
| init_cncpt.fct_cncpt | Data Concepts |
| init_cncpt.num_cncpt | Data Concepts |
| init_cncpt.rec_cncpt | Data Concepts |
| init_cncpt.unt_cncpt | Data Concepts |
| init_itm | Data items |
| init_itm.col_itm | Data items |
| init_itm.fun_itm | Data items |
| init_itm.hrd_itm | Data items |
| init_itm.itm | Data items |
| init_itm.rgx_itm | Data items |
| init_itm.sel_itm | Data items |
| interval | ICU class meta data utilities |
| is_cncpt | Data Concepts |
| is_concept | Data Concepts |
| is_false | Utility functions |
| is_id_tbl | Tabular ICU data classes |
| is_item | Data items |
| is_itm | Data items |
| is_regular | Time series utility functions |
| is_sorted | ICU class data utilities |
| is_true | Utility functions |
| is_ts_tbl | Tabular ICU data classes |
| is_unique | ICU class data utilities |
| is_val | Utility functions |
| is_win_tbl | Tabular ICU data classes |
| item | Data items |
-- L --
| last_elem | Utility functions |
| load_concepts | Load concept data |
| load_concepts.character | Load concept data |
| load_concepts.cncpt | Load concept data |
| load_concepts.concept | Load concept data |
| load_concepts.fct_cncpt | Load concept data |
| load_concepts.integer | Load concept data |
| load_concepts.item | Load concept data |
| load_concepts.itm | Load concept data |
| load_concepts.lgl_cncpt | Load concept data |
| load_concepts.numeric | Load concept data |
| load_concepts.num_cncpt | Load concept data |
| load_concepts.rec_cncpt | Load concept data |
| load_concepts.unt_cncpt | Load concept data |
| load_dictionary | Load concept dictionaries |
| load_difftime | Low level functions for loading data |
| load_difftime.aumc_tbl | Low level functions for loading data |
| load_difftime.character | Low level functions for loading data |
| load_difftime.eicu_tbl | Low level functions for loading data |
| load_difftime.hirid_tbl | Low level functions for loading data |
| load_difftime.miiv_tbl | Low level functions for loading data |
| load_difftime.mimic_tbl | Low level functions for loading data |
| load_id | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_id.character | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_id.default | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_id.fun_itm | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_id.itm | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_id.src_tbl | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_src | Low level functions for loading data |
| load_src.character | Low level functions for loading data |
| load_src.src_tbl | Low level functions for loading data |
| load_src_cfg | Load configuration for a data source |
| load_ts | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_ts.character | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_ts.default | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_ts.fun_itm | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_ts.itm | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_ts.src_tbl | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_win | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_win.character | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_win.default | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_win.fun_itm | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_win.itm | Load data as 'id_tbl' or 'ts_tbl' objects |
| load_win.src_tbl | Load data as 'id_tbl' or 'ts_tbl' objects |
-- M --
| max_or_na | Utility functions |
| meta_vars | ICU class meta data utilities |
| mews_score | SIRS score label |
| miiv | ICU datasets |
| mimic | ICU datasets |
| mimic_demo | ICU datasets |
| mins | Utilities for 'difftime' |
| min_or_na | Utility functions |
| msg_progress | Message signaling nested with progress reporting |
-- N --
| news_score | SIRS score label |
| new_cncpt | Data Concepts |
| new_concept | Data Concepts |
| new_item | Data items |
| new_itm | Data items |
| norepi_equiv | Concept callback functions |
| not_val | Utility functions |
-- P --
| pafi | Concept callback functions |
-- Q --
| qsofa_score | SIRS score label |
-- R --
| read_psv | Read and write utilities |
| remove_gaps | Time series utility functions |
| rename_cols | ICU class data utilities |
| replace_na | ICU class data utilities |
| rm_cols | ICU class data utilities |
| rm_na | ICU class data utilities |
-- S --
| safi | Concept callback functions |
| secs | Utilities for 'difftime' |
| sep3 | Sepsis 3 label |
| setup_src_data | Data setup |
| setup_src_env | Data attach utilities |
| setup_src_env.src_cfg | Data attach utilities |
| set_config | File system utilities |
| set_val | Item callback utilities |
| sirs_score | SIRS score label |
| slide | Time series utility functions |
| slide_index | Time series utility functions |
| sofa_cardio | SOFA score label |
| sofa_cns | SOFA score label |
| sofa_coag | SOFA score label |
| sofa_liver | SOFA score label |
| sofa_renal | SOFA score label |
| sofa_resp | SOFA score label |
| sofa_score | SOFA score label |
| sort.id_tbl | ICU class data utilities |
| src_data_dir | File system utilities |
| stay_windows | Stays |
| stay_windows.character | Stays |
| stay_windows.default | Stays |
| stay_windows.list | Stays |
| stay_windows.src_env | Stays |
| supp_o2 | Concept callback functions |
| susp_inf | Suspicion of infection label |
-- T --
| time_step | ICU class meta data utilities |
| time_unit | ICU class meta data utilities |
| time_vars | ICU class meta data utilities |
| transform_fun | Item callback utilities |
| ts_tbl | Tabular ICU data classes |
-- U --
| unique.id_tbl | ICU class data utilities |
| upgrade_id | Switch between id types |
| upgrade_id.id_tbl | Switch between id types |
| upgrade_id.ts_tbl | Switch between id types |
| urine24 | Concept callback functions |
-- V --
| validate_tbl | Tabular ICU data classes |
| vaso60 | Concept callback functions |
| vaso_ind | Concept callback functions |
| vent_ind | Concept callback functions |
-- W --
| weeks | Utilities for 'difftime' |
| win_tbl | Tabular ICU data classes |
| write_psv | Read and write utilities |