Anova.glmmTMB |
Downstream methods |
as.data.frame.ranef.glmmTMB |
Extract Random Effects |
betabinomial |
Family functions for glmmTMB |
beta_family |
Family functions for glmmTMB |
checkDepPackageVersion |
Check for version mismatch in dependent binary packages |
coef.glmmTMB |
Extract Random Effects |
compois |
Family functions for glmmTMB |
confint.glmmTMB |
Calculate confidence intervals |
confint.profile.glmmTMB |
Compute likelihood profiles for a fitted model |
deviance.glmmTMB |
Compute residuals for a glmmTMB object |
diagnose |
diagnose model problems |
downstream_methods |
Downstream methods |
dtruncated_nbinom1 |
truncated distributions |
dtruncated_nbinom2 |
truncated distributions |
dtruncated_poisson |
truncated distributions |
Effect.glmmTMB |
Downstream methods |
emmeans.glmmTMB |
Downstream methods |
epil2 |
Seizure Counts for Epileptics - Extended |
expandGrpVar |
apply |
family_glmmTMB |
Family functions for glmmTMB |
family_params |
Retrieve family-specific parameters |
finalizeTMB |
Optimize TMB models and package results, modularly |
findReTrmClasses |
list of specials - taken from enum.R |
fitTMB |
Optimize TMB models and package results, modularly |
fixef |
Extract fixed-effects estimates |
fixef.glmmTMB |
Extract fixed-effects estimates |
formatVC |
Format the 'VarCorr' Matrix of Random Effects |
formula.glmmTMB |
Extract the formula of a glmmTMB object |
genpois |
Family functions for glmmTMB |
getCapabilities |
List model options that glmmTMB knows about |
getME |
Extract or Get Generalize Components from a Fitted Mixed Effects Model |
getME.glmmTMB |
Extract or Get Generalize Components from a Fitted Mixed Effects Model |
getReStruc |
Calculate random effect structure Calculates number of random effects, number of parameters, block size and number of blocks. Mostly for internal use. |
getXReTrms |
Create X and random effect terms from formula |
get_cor |
translate vector of correlation parameters to correlation values |
glmmTMB |
Fit Models with TMB |
glmmTMBControl |
Control parameters for glmmTMB optimization |
gt_load |
conditionally update glmmTMB object fitted with an old TMB version |
isLMM.glmmTMB |
support methods for parametric bootstrapping |
lognormal |
Family functions for glmmTMB |
model.matrix.glmmTMB |
Methods for extracting developer-level information from 'glmmTMB' models |
nbinom1 |
Family functions for glmmTMB |
nbinom2 |
Family functions for glmmTMB |
numFactor |
Factor with numeric interpretable levels. |
omp_check |
Check OpenMP status |
ordbeta |
Family functions for glmmTMB |
OwlModel |
Begging by Owl Nestlings |
OwlModel_nb1_bs |
Begging by Owl Nestlings |
OwlModel_nb1_bs_mcmc |
Begging by Owl Nestlings |
Owls |
Begging by Owl Nestlings |
parseNumLevels |
Factor with numeric interpretable levels. |
predict.glmmTMB |
prediction |
print.VarCorr.glmmTMB |
Printing The Variance and Correlation Parameters of a 'glmmTMB' |
priors |
use of priors in glmmTMB |
profile.glmmTMB |
Compute likelihood profiles for a fitted model |
put_cor |
translate vector of correlation parameters to correlation values |
ranef |
Extract Random Effects |
ranef.glmmTMB |
Extract Random Effects |
refit.glmmTMB |
support methods for parametric bootstrapping |
reinstalling |
Reinstalling binary dependencies |
residuals.glmmTMB |
Compute residuals for a glmmTMB object |
RHSForm |
extract right-hand side of a formula |
Salamanders |
Repeated counts of salamanders in streams |
sigma |
Extract residual standard deviation or dispersion parameter |
sigma.glmmTMB |
Extract residual standard deviation or dispersion parameter |
simulate.glmmTMB |
Simulate from a glmmTMB fitted model |
simulate_new |
Simulate from covariate/metadata in the absence of a real data set (EXPERIMENTAL) |
terms.glmmTMB |
Methods for extracting developer-level information from 'glmmTMB' models |
truncated_compois |
Family functions for glmmTMB |
truncated_genpois |
Family functions for glmmTMB |
truncated_nbinom1 |
Family functions for glmmTMB |
truncated_nbinom2 |
Family functions for glmmTMB |
truncated_poisson |
Family functions for glmmTMB |
tweedie |
Family functions for glmmTMB |
t_family |
Family functions for glmmTMB |
up2date |
conditionally update glmmTMB object fitted with an old TMB version |
vcov.glmmTMB |
Calculate Variance-Covariance Matrix for a Fitted glmmTMB model |
weights.glmmTMB |
Extract weights from a glmmTMB object |
ziGamma |
Family functions for glmmTMB |