.getPermuteMatrix |
Generate permutation matrix according to a schema. |
.procmod_coerce_value |
Internal function coercing the data to a matrix. |
.rep_matrix |
Internal function repeating a matrix. |
.Trace |
Compute the trace of a square matrix. |
as.data.frame.dist |
Converts a 'dist' object to a 'data.frame' object. |
as_procmod_frame |
Coerce to a ProcMod Frame. |
as_procmod_frame.array |
Coerce to a ProcMod Frame. |
as_procmod_frame.list |
Coerce to a ProcMod Frame. |
as_procmod_frame.matrix |
Coerce to a ProcMod Frame. |
as_procmod_frame.procmod_frame |
Coerce to a ProcMod Frame. |
bacteria |
DNA metabarcoding Australia South-North Gradient |
bicenter |
Double centering of a matrix. |
climat |
DNA metabarcoding Australia South-North Gradient |
corls |
Procrustean Correlation, and Variance / Covariance Matrices. |
corls_test |
Monte-Carlo Test on the sum of the singular values of a procustean rotation. |
dim.procmod_frame |
Dimensions of a ProcMod Frame. |
eukaryotes |
DNA metabarcoding Australia South-North Gradient |
geography |
DNA metabarcoding Australia South-North Gradient |
is_euclid |
Test if the distance matrix is euclidean. |
is_procmod_frame |
Check if an object is a ProcMod Frame. |
names.procmod_corls |
The Names of the elements of a Correlation Matrix |
names.procmod_varls |
The Names of the elements of a Variance / Covariance Matrix. |
nmds |
Project a distance matrix in a euclidean space (NMDS). |
ortho |
Project a dataset in a euclidean space. |
ortho.data.frame |
Project a dataset in a euclidean space. |
ortho.dist |
Project a dataset in a euclidean space. |
ortho.matrix |
Project a dataset in a euclidean space. |
ortho.procmod_frame |
Project a dataset in a euclidean space. |
pca |
Project a set of points in a euclidean space (PCA). |
pcoa |
Project a distance matrix in a euclidean space (PCOA). |
print.procmod_corls |
Print a procrustean Correlation Matrix. |
print.procmod_varls |
Print procrustean Variance / Covariance Matrix. |
procmod |
Informative Procrustean Matrix Correlation |
procmod_frame |
The procmod_frame data structure. |
protate |
Rotate the 'src' matrix to fit into the space of the 'dest' matrix. |
simulate_correlation |
Simulate n points of dimension p correlated to a reference matrix. |
simulate_matrix |
Simulate n points of dimension p. |
soil |
DNA metabarcoding Australia South-North Gradient |
subset.procmod_frame |
Subsetting Procmod Frames |
varls |
Procrustean Correlation, and Variance / Covariance Matrices. |