Informative Procrustean Matrix Correlation

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Documentation for package ‘ProcMod’ version 1.0.8

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.getPermuteMatrix Generate permutation matrix according to a schema.
.procmod_coerce_value Internal function coercing the data to a matrix.
.rep_matrix Internal function repeating a matrix.
.Trace Compute the trace of a square matrix.
as.data.frame.dist Converts a 'dist' object to a 'data.frame' object.
as_procmod_frame Coerce to a ProcMod Frame.
as_procmod_frame.array Coerce to a ProcMod Frame.
as_procmod_frame.list Coerce to a ProcMod Frame.
as_procmod_frame.matrix Coerce to a ProcMod Frame.
as_procmod_frame.procmod_frame Coerce to a ProcMod Frame.
bacteria DNA metabarcoding Australia South-North Gradient
bicenter Double centering of a matrix.
climat DNA metabarcoding Australia South-North Gradient
corls Procrustean Correlation, and Variance / Covariance Matrices.
corls_test Monte-Carlo Test on the sum of the singular values of a procustean rotation.
dim.procmod_frame Dimensions of a ProcMod Frame.
eukaryotes DNA metabarcoding Australia South-North Gradient
geography DNA metabarcoding Australia South-North Gradient
is_euclid Test if the distance matrix is euclidean.
is_procmod_frame Check if an object is a ProcMod Frame.
names.procmod_corls The Names of the elements of a Correlation Matrix
names.procmod_varls The Names of the elements of a Variance / Covariance Matrix.
nmds Project a distance matrix in a euclidean space (NMDS).
ortho Project a dataset in a euclidean space.
ortho.data.frame Project a dataset in a euclidean space.
ortho.dist Project a dataset in a euclidean space.
ortho.matrix Project a dataset in a euclidean space.
ortho.procmod_frame Project a dataset in a euclidean space.
pca Project a set of points in a euclidean space (PCA).
pcoa Project a distance matrix in a euclidean space (PCOA).
print.procmod_corls Print a procrustean Correlation Matrix.
print.procmod_varls Print procrustean Variance / Covariance Matrix.
procmod Informative Procrustean Matrix Correlation
procmod_frame The procmod_frame data structure.
protate Rotate the 'src' matrix to fit into the space of the 'dest' matrix.
simulate_correlation Simulate n points of dimension p correlated to a reference matrix.
simulate_matrix Simulate n points of dimension p.
soil DNA metabarcoding Australia South-North Gradient
subset.procmod_frame Subsetting Procmod Frames
varls Procrustean Correlation, and Variance / Covariance Matrices.