comorbidity_asso |
Generate comorbidity association result file |
comorbidity_summary |
Create comorbidity summary file |
covid_example |
Provide working directory for UKB.COVID19 example files |
data_reform |
Reform variables |
log_cov |
Perform association tests between phenotype and covariates |
makeGWASFiles |
Generate files for GWAS Software. SAIGE and Plink currently supported. |
makePhenotypes |
Generate COVID-19 phenotypes |
risk_factor |
Generate covariate file |
sampleQC |
Sample QC for genetic analyses |
variantQC |
Variant QC for Genetic Analyses |