| alignPoly | Align various types of coefficient matrices | 
| allTrees | Calculate all full unordered m-ary trees up to n tips | 
| plotExtremeTrees | Plot the min/max distance trees from a target tree | 
| polyDist | Calculates the distance between coefficient matrices | 
| polyToDistMat | Calculates the distance matrix from a list coefficient matrices | 
| treeDist | Calculates the distance between trees | 
| treeJuliaSet | Plots a Julia Set for a tree | 
| treeToDistMat | Calculates the distance matrix from a list of phylo objects | 
| treeToPoly | Convert trees to coefficient matrices | 
| wedge | Performs the wedge operation |