Globally-Applicable Area Disaggregated General Ecosystem Toolbox
V3
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Documentation for package ‘gadget3’ version 0.11-1
Help Pages
-- A --
| ADREPORT | Gadget3 global environment |
| as.numeric | Gadget3 global environment |
| assert_msg | Gadget3 global environment |
| as_integer | Gadget3 global environment |
| avoid_zero | Gadget3 global environment |
| avoid_zero_vec | Gadget3 global environment |
-- B --
| bounded | Gadget3 global environment |
| bounded_vec | Gadget3 global environment |
-- D --
| debug_label | G3 stock_* transformation functions |
| debug_trace | G3 stock_* transformation functions |
-- G --
| g3a_age | Gadget3 age action |
| g3a_growmature | Gadget3 growth action |
| g3a_grow_impl_bbinom | Gadget3 growth action |
| g3a_grow_lengthvbsimple | Gadget3 growth action |
| g3a_grow_weightsimple | Gadget3 growth action |
| g3a_initialconditions | Gadget3 renewal actions |
| g3a_initialconditions_normalcv | Gadget3 renewal actions |
| g3a_initialconditions_normalparam | Gadget3 renewal actions |
| g3a_mature | Gadget3 maturity action |
| g3a_mature_constant | Gadget3 maturity action |
| g3a_mature_continuous | Gadget3 maturity action |
| g3a_migrate | Gadget3 migration action |
| g3a_migrate_normalize | Gadget3 migration action |
| g3a_naturalmortality | Gadget3 natural mortality action |
| g3a_naturalmortality_exp | Gadget3 natural mortality action |
| g3a_predate_catchability_effortfleet | Gadget3 predation actions |
| g3a_predate_catchability_linearfleet | Gadget3 predation actions |
| g3a_predate_catchability_numberfleet | Gadget3 predation actions |
| g3a_predate_catchability_quotafleet | Gadget3 predation actions |
| g3a_predate_catchability_totalfleet | Gadget3 predation actions |
| g3a_predate_fleet | Gadget3 predation actions |
| g3a_predate_tagrelease | Gadget3 tag-release action |
| g3a_predate_totalfleet | Gadget3 predation actions |
| g3a_renewal | Gadget3 renewal actions |
| g3a_renewal_initabund | Gadget3 renewal actions |
| g3a_renewal_normalcv | Gadget3 renewal actions |
| g3a_renewal_normalparam | Gadget3 renewal actions |
| g3a_renewal_vonb | Gadget3 renewal actions |
| g3a_renewal_vonb_recl | Gadget3 renewal actions |
| g3a_renewal_vonb_t0 | Gadget3 renewal actions |
| g3a_report_detail | Gadget3 report actions |
| g3a_report_history | Gadget3 report actions |
| g3a_report_stock | Gadget3 report actions |
| g3a_spawn | Gadget3 spawning action |
| g3a_spawn_recruitment_bevertonholt | Gadget3 spawning action |
| g3a_spawn_recruitment_fecundity | Gadget3 spawning action |
| g3a_spawn_recruitment_hockeystick | Gadget3 spawning action |
| g3a_spawn_recruitment_ricker | Gadget3 spawning action |
| g3a_spawn_recruitment_simplessb | Gadget3 spawning action |
| g3a_tag_shedding | Gadget3 tag-release action |
| g3a_time | Gadget3 timekeeping actions |
| g3l_abundancedistribution | Gadget3 likelihood actions |
| g3l_bounds_penalty | Gadget3 likelihood bounds_penalty action |
| g3l_catchdistribution | Gadget3 likelihood actions |
| g3l_distribution_multinomial | Gadget3 likelihood actions |
| g3l_distribution_multivariate | Gadget3 likelihood actions |
| g3l_distribution_sumofsquaredlogratios | Gadget3 likelihood actions |
| g3l_distribution_sumofsquares | Gadget3 likelihood actions |
| g3l_distribution_surveyindices_linear | Gadget3 likelihood actions |
| g3l_distribution_surveyindices_log | Gadget3 likelihood actions |
| g3l_random_dnorm | Gadget3 random effects likelihood actions |
| g3l_random_walk | Gadget3 random effects likelihood actions |
| g3l_tagging_ckmr | Gadget3 CKMR likelihood |
| g3l_understocking | Gadget3 likelihood understocking action |
| g3s_age | Gadget3 stock age dimensions |
| g3s_agegroup | Gadget3 stock age dimensions |
| g3s_areagroup | Gadget3 stock area dimensions |
| g3s_clone | Gadget3 stock storage |
| g3s_livesonareas | Gadget3 stock area dimensions |
| g3s_tag | Gadget3 tag dimension |
| g3s_time | Gadget3 stock time dimensions |
| g3s_time_convert | Gadget3 stock time dimensions |
| g3_action_order | Standard gadget3 order of actions |
| g3_areas | Gadget3 stock area dimensions |
| g3_distribution_preview | Gadget3 likelihood actions |
| g3_env | Gadget3 global environment |
| g3_eval | Evaluate G3 forumulas |
| g3_fleet | Gadget3 stock storage |
| g3_formula | Gadget3 formula helpers |
| g3_global_formula | Gadget3 language utilities |
| g3_idx | G3 language extensions to R |
| g3_init_val | Gadget3 parameter value setter |
| g3_is_stock | Gadget3 stock storage |
| g3_matrix_vec | Gadget3 global environment |
| g3_native | Gadget3 language utilities |
| g3_param | G3 language extensions to R |
| g3_parameterized | Gadget3 parameter helpers |
| g3_param_table | G3 language extensions to R |
| g3_param_vector | G3 language extensions to R |
| g3_step | G3 stock_* transformation functions |
| g3_stock | Gadget3 stock storage |
| g3_stock_def | Gadget3 stock storage |
| g3_stock_instance | Gadget3 stock storage |
| g3_suitability_* | Gadget3 suitability formulae |
| g3_suitability_andersen | Gadget3 suitability formulae |
| g3_suitability_andersenfleet | Gadget3 suitability formulae |
| g3_suitability_constant | Gadget3 suitability formulae |
| g3_suitability_exponential | Gadget3 suitability formulae |
| g3_suitability_exponentiall50 | Gadget3 suitability formulae |
| g3_suitability_gamma | Gadget3 suitability formulae |
| g3_suitability_richards | Gadget3 suitability formulae |
| g3_suitability_straightline | Gadget3 suitability formulae |
| g3_timeareadata | Gadget3 time-based data |
| g3_timevariable | Gadget3 time-based formulas |
| g3_tmb_adfun | Gadget3 actions into TMB code |
| g3_tmb_lower | Gadget3 actions into TMB code |
| g3_tmb_par | Gadget3 actions into TMB code |
| g3_tmb_parscale | Gadget3 actions into TMB code |
| g3_tmb_relist | Gadget3 actions into TMB code |
| g3_tmb_upper | Gadget3 actions into TMB code |
| g3_to_desc | Gadget3 actions into R code |
| g3_to_r | Gadget3 actions into R code |
| g3_to_tmb | Gadget3 actions into TMB code |
| g3_with | G3 language extensions to R |
-- L --
| lgamma_vec | Gadget3 global environment |
| logspace_add | Gadget3 global environment |
| logspace_add_vec | Gadget3 global environment |
-- N --
| normalize_vec | Gadget3 global environment |
| nvl | Gadget3 global environment |
-- P --
| pow_vec | Gadget3 global environment |
| print.g3_r | Gadget3 actions into R code |
| print_array | Gadget3 global environment |
-- R --
| ratio_add_vec | Gadget3 global environment |
| REPORT | Gadget3 global environment |
| REprintf | Gadget3 global environment |
| Rprintf | Gadget3 global environment |
-- S --
| stock_assert | G3 stock_* transformation functions |
| stock_interact | G3 stock_* transformation functions |
| stock_intersect | G3 stock_* transformation functions |
| stock_iterate | G3 stock_* transformation functions |
| stock_prepend | G3 stock_* transformation functions |
| stock_ss | G3 stock_* transformation functions |
| stock_ssinv | G3 stock_* transformation functions |
| stock_switch | G3 stock_* transformation functions |
| stock_with | G3 stock_* transformation functions |