| callsInSingleExperiment |
Simulation of a single population PDX experiment |
| getMode |
Function to return the mode of a vector of values |
| noFalseCalls |
Function to calculate the number of false calls for a design for a go-no go threshold |
| noMissedCalls |
Function to calculate the number of missed calls for a design for a go-no go threshold |
| outcomeInSingleExperiment |
Function to summarise the results for a single simulation representing one experiment |
| outcomeMultipleExperiments |
Function to run simulations to mimic population PDX studies for a defined scenario |
| plotFalsepositive |
A function to visualise the false postive rate as a function of PDXn and PDXr |
| plotSensitivity |
A function to visualise the sensitivity as a function of PDXn and PDXr |
| populationPDXdesignApp |
Function 'populationPDXdesignApp' |
| server |
'shiny' app server function |
| ui |
'shiny' app user interface function |
| varyingPDXnPDXrBiolRR |
Function to run simulations to mimic population PDX studies for variety of experimental and biological scenarios |
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