CpGassoc-package |
Association Between Methylation and a Phenotype of Interest |
annotation |
Sample data from 'CpGassoc' |
cpg.assoc |
Association Analysis Between Methylation Beta Values and Phenotype of Interest |
cpg.combine |
Combine various objects of class '"cpg"' |
cpg.everything |
Multi-Task function |
cpg.everything.character |
Multi-Task function |
cpg.everything.complex |
Multi-Task function |
cpg.everything.logical |
Multi-Task function |
cpg.everything.matrix |
Multi-Task function |
cpg.everything.numeric |
Multi-Task function |
cpg.GC |
cpg.GC and methods for output of function |
cpg.length |
Information on miscellaneous other functions |
cpg.perm |
Perform a Permutation Test of the Association Between Methylation and a Phenotype of Interest |
cpg.qc |
Performs quality control on Illumina data. |
cpg.work |
Does the analysis between the CpG sites and phenotype of interest |
CpGassoc |
Association Between Methylation and a Phenotype of Interest |
cpgassocsummary |
Information on miscellaneous other functions |
design |
Create full and reduced design matrices for the cpg.assoc function. |
design.data.frame |
Create full and reduced design matrices for the cpg.assoc function. |
design.NULL |
Create full and reduced design matrices for the cpg.assoc function. |
manhattan |
Create a manhattan plot |
manhattan.reflect |
Create a Reflective Manhattan plot |
plot.cpg |
Methods for object of class '"cpg"' |
plot.cpg.perm |
Methods for object of class '"cpg.perm"'. |
pointsizefunction |
Information on miscellaneous other functions |
print.cpg |
Methods for object of class '"cpg"' |
print.cpg.gc |
cpg.GC and methods for output of function |
print.cpg.perm |
Methods for object of class '"cpg.perm"'. |
print.cpg.perm.gc |
cpg.GC and methods for output of function |
samplecpg |
Sample data from 'CpGassoc' |
samplepheno |
Sample data from 'CpGassoc' |
scatterplot |
Plot beta values of individual CpG sites against the independent variable. |
sort.cpg |
Methods for object of class '"cpg"' |
sort.cpg.perm |
Methods for object of class '"cpg.perm"'. |
summary.cpg |
Methods for object of class '"cpg"' |
summary.cpg.perm |
Methods for object of class '"cpg.perm"'. |