Marine Benthic Ecosystem Analysis


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Documentation for package ‘benthos’ version 1.3-6

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benthos-package Marine Benthic Ecosystem Analysis
.pool Pooling
abundance Abundance
abundance_ Abundance
ambi AZTI Marine Biotic Index (AMBI)
ambi_ AZTI Marine Biotic Index (AMBI)
as_accepted Convert Taxon Names to Comply with WoRMS/TWN
benthos Marine Benthic Ecosystem Analysis
bray_curtis Bray-Curtis Dissimilarity
eqr Ecological Quality Ratio (EQR)
generic_name Binomial Names 'is_binomial' tests for valid binomial names, 'generic_name' extracts the genus to which the species belongs, 'specific_name' extracts the species within the genus.
genus_to_species Genus to Species Conversion
get_ambi Get Supplementary AMBI Sensitivity Groups
get_iti Get Infaunal Trophic Index
get_taxa Read and Validate Taxa Data
get_worms Read and Validate Taxa Waterbeheer Nederland (TWN) Data
harmonize Harmonize Case
has_ambi AZTI Marine Biotic Index (AMBI)
has_ambi_ AZTI Marine Biotic Index (AMBI)
has_iti Infaunal Trophic Index (ITI)
has_iti_ Infaunal Trophic Index (ITI)
hill Hill's Diversity Numbers
hill0 Hill's Diversity Numbers
hill0_ Hill's Diversity Numbers
hill1 Hill's Diversity Numbers
hill1_ Hill's Diversity Numbers
hill2 Hill's Diversity Numbers
hill2_ Hill's Diversity Numbers
hill_ Hill's Diversity Numbers
hpie Hurlbert's Probability of Interspecific Encounter (PIE)
hpie_ Hurlbert's Probability of Interspecific Encounter (PIE)
hurlbert Hurlbert's Expected Number of Species
hurlbert_ Hurlbert's Expected Number of Species
is_accepted Convert Taxon Names to Comply with WoRMS
is_accepted_ Convert Taxon Names to Comply with WoRMS
is_azoic Test for Azoic Samples
is_binomen Binomial Names 'is_binomial' tests for valid binomial names, 'generic_name' extracts the genus to which the species belongs, 'specific_name' extracts the species within the genus.
is_worms Convert Taxon Names to Comply with WoRMS
is_worms_ Convert Taxon Names to Comply with WoRMS
iti Infaunal Trophic Index (ITI)
iti_ Infaunal Trophic Index (ITI)
lnn Total Abundance
lnn_ Total Abundance
margalef Margalef Index of Diversity
margalef_ Margalef Index of Diversity
northsea MWTL North Sea Bentos Data
oosterschelde Oosterschelde Marine Benthos Data
pool Pooling
read_ambi Read and Validate AMBI Sensitivity Data
read_beqi2 Read and Validate BEQI2 Input Files
read_iti Read and Validate Infaunal Trophic Index Files
read_ref Read and Validate Habitat References Files
read_taxa Read and Validate Taxa Data
read_twn Read and Validate Taxa Waterbeheer Nederland (TWN) Data
rygg Rygg's Index of Diversity
rygg_ Rygg's Index of Diversity
shannon Shannon's Index or Entropy
shannon_ Shannon's Index or Entropy
simpson Simpson's Measure of Concentration
simpson_ Simpson's Measure of Concentration
species_richness Species Richness
species_richness_ Species Richness
specific_name Binomial Names 'is_binomial' tests for valid binomial names, 'generic_name' extracts the genus to which the species belongs, 'specific_name' extracts the species within the genus.
strip_sp Binomial Names 'is_binomial' tests for valid binomial names, 'generic_name' extracts the genus to which the species belongs, 'specific_name' extracts the species within the genus.
strip_spaces Remove Redundant Spaces
total_abundance Total Abundance
total_abundance_ Total Abundance
to_worms Convert Taxon Names to Comply with WoRMS
validate_ambi Read and Validate AMBI Sensitivity Data
validate_beqi2 Read and Validate BEQI2 Input Files
validate_iti Read and Validate Infaunal Trophic Index Files
validate_ref Read and Validate Habitat References Files
validate_taxa Read and Validate Taxa Data
validate_twn Read and Validate Taxa Waterbeheer Nederland (TWN) Data