convergence_tests |
Perform convergence tests on the p and beta variables |
df_counts_obesity |
Example microbiome data |
df_counts_obesity,df_scfa |
Example microbiome data |
df_scfa |
Example microbiome data |
install_bracod |
Install BRACoD in python |
obesity |
Example microbiome data |
remove_null |
Remove NULL values in your OTU and environmental variable |
run_bracod |
Run the main BRACoD algorithm |
scale_counts |
Normalize OTU counts and add a pseudo count |
score |
Score the results of BRACoD |
simulate_microbiome_counts |
Simulate microbiome counts |
summarize_trace |
Summarize the results of BRACoD |
threshold_count_data |
Threshold your microbiome counts data |