bnpsd-package |
A package for modeling and simulating an admixed population |

admix_prop_1d_circular |
Construct admixture proportion matrix for circular 1D geography |

admix_prop_1d_linear |
Construct admixture proportion matrix for 1D geography |

admix_prop_indep_subpops |
Construct admixture proportion matrix for independent subpopulations |

bnpsd |
A package for modeling and simulating an admixed population |

coanc_admix |
Construct the coancestry matrix of an admixture model |

coanc_to_kinship |
Transform coancestry matrix to kinship matrix |

draw_all_admix |
Simulate random allele frequencies and genotypes from the BN-PSD admixture model |

draw_genotypes_admix |
Draw genotypes from the admixture model |

draw_p_anc |
Draw random Uniform or Beta ancestral allele frequencies |

draw_p_subpops |
Draw allele frequencies for independent subpopulations |

fixed_loci |
Identify fixed loci |

fst_admix |
Calculate FST for the admixed individuals |

make_p_ind_admix |
Construct individual-specific allele frequency matrix under the PSD admixture model |