EcoLinkPredict-package |
Predicting Missing Links |

CalcHostLevelCoverage |
Estimated probabilities of missing links based on the host Level Coverage Deficit |

ComputeCI |
Compute Basic Confidence Intervals |

CoverageEstimator |
Coverage Estimator, using Chao1 Index, Turing-Good or Binomial depending on what is possible |

CreateListObject |
Generates a network list from a food web |

EcoLinkPredict |
Predicting Missing Links |

FitAllModels |
Fit all the models |

FitBothMandC |
Fit Matching-Centrality Model |

FitCentrality |
Fit Centrality Model |

FitMatching |
Fit Latent Trait (Matching Model) |

FitSBM |
Fit SBM Model |

make_true_and_sample_web |
Make an artificial bipartite networks with some properties of ecological networks, then sample from it |

Optimiser |
Optimiser wrapper for network models |

Optimise_SBM |
Custom optimiser function for SBM models |

PlotFit |
Plot the fitted network models |

PlotRarefaction |
Plot Metric Response To Network Rarefaction |

PredictLinks |
Generates a network list from a food web and fits all network models |

RarefyNetwork |
Recalculate Network Metrics With Rarefied Webs |

SortResponseCategory |
Adds a dataframe that defines each interaction as true positive, false negative or true negative |

TestAllModels |
Test the models by AUC |

TestAUC |
Test via AUC the predictive capacity of each model or combination of models |