CalcHostLevelCoverage |
Estimated probabilities of missing links based on the host Level Coverage Deficit |
ComputeCI |
Compute Basic Confidence Intervals |
CoverageEstimator |
Coverage Estimator, using Chao1 Index, Turing-Good or Binomial depending on what is possible |
CreateListObject |
Generates a network list from a food web |
FitAllModels |
Fit all the models |
FitBothMandC |
Fit Matching-Centrality Model |
FitCentrality |
Fit Centrality Model |
FitMatching |
Fit Latent Trait (Matching Model) |
FitSBM |
Fit SBM Model |
make_true_and_sample_web |
Make an artificial bipartite networks with some properties of ecological networks, then sample from it |
Optimiser |
Optimiser wrapper for network models |
Optimise_SBM |
Custom optimiser function for SBM models |
PlotFit |
Plot the fitted network models |
PlotRarefaction |
Plot Metric Response To Network Rarefaction |
PredictLinks |
Generates a network list from a food web and fits all network models |
RarefyNetwork |
Recalculate Network Metrics With Rarefied Webs |
SortResponseCategory |
Adds a dataframe that defines each interaction as true positive, false negative or true negative |
TestAllModels |
Test the models by AUC |
TestAUC |
Test via AUC the predictive capacity of each model or combination of models |