avgLadder |
Average ladder size |
cherries |
Cherry number |
colless.phylo |
Colless number |
configShow |
Plot a tree highlighting configurations |
getDepths |
Find the depth of each node |
getLabGenealogy |
Create genealogy |
ILnumber |
IL number |
ladderShow |
Show ladders |
ladderSizes |
Ladder sizes |
makeEpiRecord |
Simulate epidemiological record |
maxHeight |
Maximum tree height |
nConfig |
Configuration sizes in a tree |
nodeDepth |
Node depth |
nodeDepthFrac |
Fraction of nodes beyond a given depth |
nodeImb |
Node imbalance |
nodeImbFrac |
Fraction of nodes with given imbalance |
phyloTop |
phyloTop: topological properties of phylogenies |
pitchforks |
Number of pitchforks |
rtree4 |
Random phylo4 tree |
sackin.phylo |
Sackin index |
splitTop |
Split topology |
stairs |
Stairs |
subtreeShow |
Highlight a subtree |
treeImb |
Tree imbalance |
widths |
Number of nodes at each depth |