acinar.data |
parameter files estimated from acinar.data using splatEstimate |
bridge |
Brownian bridge |
bringItemsForward |
Bring items forward |
getLNormFactors |
Get log-normal factors |
getPathOrder |
Get path order |
logistic |
Logistic function |
params_acinar |
A data frame with 1000 genes and 80 cells |
SCRIPsimBatchCellMeans |
Simulate batch means |
SCRIPsimBatchEffects |
Simulate batch effects |
SCRIPsimBCVMeans |
Simulate BCV means |
SCRIPsimDropout |
Simulate dropout |
SCRIPsimGeneMeans |
Simulate gene means |
SCRIPsimGroupCellMeans |
Simulate Group CellMeans |
SCRIPsimGroupDE |
Simulate group differential expression |
SCRIPsimLibSizes |
Simulate library sizes |
SCRIPsimPathCellMeans |
sim PathCellMeans |
SCRIPsimPathDE |
Sim PathDE |
SCRIPsimSingleCellMeans |
Simulate cell means |
SCRIPsimTrueCounts |
Simulate true counts |
SCRIPsimu |
SCRIP simulation |
simu.VEGs |
SCRIP simulation for clustering analysis |
simu_cluster |
SCRIP simulation for clustering analysis with multiple cell types |
simu_DE |
SCRIP simulation for differential expression |