An Accurate Simulator for Single-Cell RNA Sequencing Data

---

Documentation for package ‘SCRIP’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

acinar.data	parameter files estimated from acinar.data using splatEstimate
bridge	Brownian bridge
bringItemsForward	Bring items forward
getLNormFactors	Get log-normal factors
getPathOrder	Get path order
logistic	Logistic function
params_acinar	A data frame with 1000 genes and 80 cells
SCRIPsimBatchCellMeans	Simulate batch means
SCRIPsimBatchEffects	Simulate batch effects
SCRIPsimBCVMeans	Simulate BCV means
SCRIPsimDropout	Simulate dropout
SCRIPsimGeneMeans	Simulate gene means
SCRIPsimGroupCellMeans	Simulate Group CellMeans
SCRIPsimGroupDE	Simulate group differential expression
SCRIPsimLibSizes	Simulate library sizes
SCRIPsimPathCellMeans	sim PathCellMeans
SCRIPsimPathDE	Sim PathDE
SCRIPsimSingleCellMeans	Simulate cell means
SCRIPsimTrueCounts	Simulate true counts
SCRIPsimu	SCRIP simulation
simu.VEGs	SCRIP simulation for clustering analysis
simu_cluster	SCRIP simulation for clustering analysis with multiple cell types
simu_DE	SCRIP simulation for differential expression