Bivariate Angular Mixture Models

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Documentation for package ‘BAMBI’ version 2.3.5

Help Pages

add_burnin_thin Add (extra) burnin and thin to angmcmc object after original run
angmcmc Angular MCMC ('angmcmc') Object
as.mcmc.list.angmcmc Create an mcmc.list object from an angmcmc object
BAMBI 'BAMBI': An R package for Bivariate Angular Mixture Models
bestcriterion Convenience function for extracting angmcmc object, and the value of the model selection criterion corresponding to the best fitted model in stepwise fits
bestmodel Convenience function for extracting angmcmc object, and the value of the model selection criterion corresponding to the best fitted model in stepwise fits
bridge_sampler.angmcmc Log Marginal Likelihood via Bridge Sampling for angmcmc objects
circ_cor Sample circular correlation coefficients
circ_varcor_model Analytic circular variances and correlations for bivariate angular models
contour.angmcmc Contour plot for angmcmc objects with bivariate data
contour_model Contourplot for bivariate angular mixture model densities
densityplot.angmcmc Density plots for angmcmc objects
DIC Deviance Information Criterion (DIC) for angmcmc objects
dvm The univariate von Mises distribution
dvmcos The bivariate von Mises cosine model
dvmcosmix The bivariate von Mises cosine model mixtures
dvmmix The univariate von Mises mixtures
dvmsin The bivariate von Mises sine model
dvmsinmix The bivariate von Mises sine model mixtures
dwnorm The univariate Wrapped Normal distribution
dwnorm2 The bivariate Wrapped Normal distribution
dwnorm2mix The bivariate Wrapped Normal mixtures
dwnormmix The univariate Wrapped Normal mixtures
d_fitted Density and random deviates from an angmcmc object
extractsamples Extract MCMC samples for parameters from an angmcmc object
fit_angmix Fitting Bivariate and univariate angular mixture models
fit_incremental_angmix Stepwise fitting of angular mixture models with incremental component sizes and optimum model selection
fit_vmcosmix Fitting bivariate von Mises cosine model mixtures using MCMC
fit_vmmix Fitting univariate von Mises mixtures using MCMC
fit_vmsinmix Fitting bivariate von Mises sine model mixtures using MCMC
fit_wnorm2mix Fitting bivariate wrapped normal model mixtures using MCMC
fit_wnormmix Fitting univariate wrapped normal mixtures using MCMC
fix_label Fix label switching in angmcmc objects
is.angmcmc Angular MCMC ('angmcmc') Object
latent_allocation Finding latent allocation (component indicators) from an angmcmc object
logLik.angmcmc Extract Log-Likelihood from angmcmc objects
loo.angmcmc Leave-one-out cross-validation (LOO) for angmcmc objects
lpdtrace Trace and autocorrelation plots of log posterior density or log likelihood from an angmcmc object
minuspi_to_pi Wrap angles into '[-pi, pi]' or '[0, 2*pi]'
paramtrace Trace plot for parameters from an angmcmc object
plot.angmcmc Summary plots for angmcmc objects
pointest Point estimates for parameters from an angmcmc object
quantile.angmcmc Quantile estimates for parameters from an angmcmc object
rvm The univariate von Mises distribution
rvmcos The bivariate von Mises cosine model
rvmcosmix The bivariate von Mises cosine model mixtures
rvmmix The univariate von Mises mixtures
rvmsin The bivariate von Mises sine model
rvmsinmix The bivariate von Mises sine model mixtures
rwnorm The univariate Wrapped Normal distribution
rwnorm2 The bivariate Wrapped Normal distribution
rwnorm2mix The bivariate Wrapped Normal mixtures
rwnormmix The univariate Wrapped Normal mixtures
r_fitted Density and random deviates from an angmcmc object
select_chains Select chains from angmcmc objects
summary.angmcmc Summary statistics for parameters from an angmcmc object
surface_model Surface for bivariate angular mixture model densities
tim8 Backbone Dihedral Angles of Triose Phosphate Isomerase (8TIM)
vm2_mle Maximum likelihood estimation of bivariate von Mises parameters
waic.angmcmc Watanabe-Akaike Information Criterion (WAIC) for angmcmc objects
wind Saturna Island wind directions
zero_to_2pi Wrap angles into '[-pi, pi]' or '[0, 2*pi]'