binSum |
binSum |
chr7.peaks |
chr7 peaks |
clusterPeaks |
clusterPeaks |
ConvertModelList |
ConvertModelList |
demo.profiles |
Demo profiles |
featureMatrixJoint |
featureMatrixJoint |
GeomTallRect |
GeomTallRect |
H3K27ac.TDH.MMM4 |
Some histone ChIP-seq data |
H3K36me3.AM.immune.chunk21 |
H3K36me3_AM_immune chunk 21 |
H3K36me3.TDH.other.chunk1 |
H3K36me3 TDH other chunk 1 |
H3K4me3.PGP.immune.chunk2 |
H3K4me3 PGP immune chunk 2 |
H3K4me3.TDH.other.chunk8 |
H3K4me3_TDH_other chunk 8 subset |
multiClusterPeaks |
multiClusterPeaks |
overflow.list |
Data set that caused integer overflow |
peak.at.profile.end |
peak at profile end |
peak1.infeasible |
data where the PeakSegJoint model with 1 peak is infeasible |
PeakErrorSamples |
PeakErrorSamples |
PeakSegJointError |
PeakSegJointError |
PeakSegJointFaster |
PeakSegJointFaster |
PeakSegJointFasterOne |
PeakSegJointFasterOne |
PeakSegJointHeuristic |
PeakSegJointHeuristic |
PeakSegJointHeuristicStep1 |
PeakSegJointHeuristicStep1 |
PeakSegJointHeuristicStep2 |
PeakSegJointHeuristicStep2 |
PeakSegJointSeveral |
PeakSegJointSeveral |
PoissonLoss |
PoissonLoss |
ProfileList |
ProfileList |