Joint Peak Detection in Several ChIP-Seq Samples
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Documentation for package ‘PeakSegJoint’ version 2024.6.27
Help Pages
| binSum | binSum |
| chr7.peaks | chr7 peaks |
| clusterPeaks | clusterPeaks |
| ConvertModelList | ConvertModelList |
| demo.profiles | Demo profiles |
| featureMatrixJoint | featureMatrixJoint |
| GeomTallRect | GeomTallRect |
| H3K27ac.TDH.MMM4 | Some histone ChIP-seq data |
| H3K36me3.AM.immune.chunk21 | H3K36me3_AM_immune chunk 21 |
| H3K36me3.TDH.other.chunk1 | H3K36me3 TDH other chunk 1 |
| H3K4me3.PGP.immune.chunk2 | H3K4me3 PGP immune chunk 2 |
| H3K4me3.TDH.other.chunk8 | H3K4me3_TDH_other chunk 8 subset |
| multiClusterPeaks | multiClusterPeaks |
| overflow.list | Data set that caused integer overflow |
| peak.at.profile.end | peak at profile end |
| peak1.infeasible | data where the PeakSegJoint model with 1 peak is infeasible |
| PeakErrorSamples | PeakErrorSamples |
| PeakSegJointError | PeakSegJointError |
| PeakSegJointFaster | PeakSegJointFaster |
| PeakSegJointFasterOne | PeakSegJointFasterOne |
| PeakSegJointHeuristic | PeakSegJointHeuristic |
| PeakSegJointHeuristicStep1 | PeakSegJointHeuristicStep1 |
| PeakSegJointHeuristicStep2 | PeakSegJointHeuristicStep2 |
| PeakSegJointSeveral | PeakSegJointSeveral |
| PoissonLoss | PoissonLoss |
| ProfileList | ProfileList |