Convert Data among QTL Mapping Packages


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Documentation for package ‘qtl2convert’ version 0.30

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cbind_smother Combine matrices by columns, replacing matching ones and adding unique ones
count_unique_geno Count the unique genotypes for each row of a genotype matrix
cross2_do_to_genail Convert cross2 object from do to genail8
cross2_do_to_genail8 Convert cross2 object from do to genail8
cross2_ril_to_genril Convert cross2 object from ril to genril
encode_geno Encode a matrix of genotypes using a set of allele codes
find_consensus_geno Find the consensus genotype for each row of a genotype matrix
find_unique_geno Find the unique genotypes for each row of a genotype matrix
map_df_to_list Marker map data frame to list
map_list_to_df Marker map list to data frame
probs_doqtl_to_qtl2 Convert DOQTL genotype probabilities to R/qtl2 format
probs_qtl2_to_array Convert R/qtl2 genotype probabilities to a 3d array
probs_qtl2_to_doqtl Convert R/qtl2 genotype probabilities to DOQTL format
probs_qtl_to_qtl2 Convert R/qtl genotype probabilities to R/qtl2 format
scan_qtl2_to_qtl Convert scan1 results to the scanone format
scan_qtl_to_qtl2 Convert R/qtl scanone results to R/qtl2 scan1 format
write2csv Write a data frame to a CSV file