Nested Data Summary, Adverse Events and REDCap

Documentation for package ‘BiostatsUHNplus’ version 0.0.10

ae	Simulated adverse events for patients receiving two study agents.
ae_timeline_plot	Outputs related adverse event timeline plots including just system organ class (AE category), or system organ class and lowest level term (AE detail). This function can fit up to 5 different attributions. Modify width, height and scale parameters in ggsave() to customize fit for large plot.
as_numeric_parse	Modification of the as.numeric function that prints entries that fail to parse as a message
caterpillar_plot	Caterpillar plot. Useful for plotting random effects from hierarchical models, such as MCMCglmm::MCMCglmm() object, that have binary outcome.
covsum_nested	Nested version of reportRmd covsum()
demography	Simulated demography for patients.
drug1_admin	Simulated study agent 1 for patients.
drug2_admin	Simulated study agent 2 for patients.
dsmb_ccru	Outputs the three DSMB-CCRU AE summary tables in Excel format per UHN template
enrollment	Enrollment data Simulated enrollment for patients.
ineligibility	Simulated ineligibility for patients.
nice_mcmcglmm	Nice table of model output from MCMCglmm::MCMCglmm()
nice_mcmcglmm_icc	Nice table of intraclass correlation coefficients from MCMCglmm::MCMCglmm() model output
redcap_data_out	Combines exported REDCap raw and label .csv files together with data dictionary. Tranforms the exported data into Excel sheets by survey instrument with one row per participant
rm_covsum_nested	Outputs a nested version of reportRmd::rm_covsum()