Site Occupancy Modeling for Environmental DNA Metabarcoding

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Documentation for package ‘occumb’ version 1.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

eval_util_L	Expected utility for local species diversity assessments.
eval_util_R	Expected utility for regional species diversity assessments.
fish	Fish eDNA metabarcoding dataset
fish_raw	Fish eDNA metabarcoding dataset
get_posterior	Extract posterior samples or summary of parameters from a model-fit object.
get_post_samples	Extract posterior samples or summary of parameters from a model-fit object.
get_post_summary	Extract posterior samples or summary of parameters from a model-fit object.
gof	Goodness-of-fit assessment of the fitted model.
list_cond_L	Conditions for local assessment under certain budget and cost values.
list_cond_R	Conditions for regional assessment under certain budget and cost values.
occumb	Model-fitting function.
occumbData	Constructor for occumbData data class.
plot-method	Plot method for occumbFit class.
plot-method	Plot method for occumbGof class.
predict-method	Predict method for occumbFit class.
summary-method	Summary method for occumbData class.
summary-method	Summary method for occumbFit class.