Transformation Models with Mixed Effects

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Documentation for package ‘tramME’ version 1.0.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Code demos. Use demo() to run them.
• Package NEWS.

Help Pages

anova.tramME	Comparison of nested tramME models.
BoxCoxME	Non-normal (Box-Cox-type) Linear Mixed-effects Additive Regression Model
coef.LmME	Extract the coefficients of an 'LmME' model
coef.SurvregME	Extract the coefficients of the fixed effects terms of an SurvregME model.
coef.tramME	Extract the coefficients of a 'tramME' model
coef<-.tramME	Set coefficients of a tramME model.
ColrME	Mixed-effects Additive Continuous Outcome Logistic Regression Model
confband.tramME	Confidence intervals and bands from a 'tramME' model
confint.LmME	Confidence intervals for LmME model parameters
confint.tramME	Confidence intervals for tramME model parameters
CoxphME	Mixed-effects Additive Parametric Cox Regression Model
edf_smooth	EDFs of smooth shift terms
edf_smooth.tramME	EDFs of smooth shift terms
format.Resp	Response objects
is.na.Resp	Response objects
LehmannME	Mixed-effects Additive Lehmann-alternative Linear Regression Model
length.Resp	Response objects
LmME	Mixed-effects Additive Normal Linear Regression Model
logLik.tramME	Get the log-likelihood of the tramME model
model.frame.tramME	Extract model frame from a tramME model
model.matrix.tramME	Model matrices for 'tramME' models
optim_control	Set up and control optimization parameters
plot.confband.tramME	Plot confidence bands from 'tramME' models
plot.smooth.tramME	Plot smooth terms of a tramME model.
plot.tramME	Plotting method for tramME objects
plot_ci	Plot confidence bands from 'tramME' models
PolrME	Mixed-effects Additive Transformation Models for Ordered Categorical Responses
predict.tramME	Predict method for tramME objects
predict.tramTMB	Post-estimation calculations in a tramTMB model
print.anova.tramME	Printing 'anova.tramME' table
print.Resp	Response objects
print.summary.tramME	Print method for tramME model summary
print.tramME	Print tramME model
print.VarCorr.tramME	Print method for the variance-correlation parameters of a tramME object
R.Resp	Response objects
ranef	Point estimates and conditional variances of random effects.
ranef.LmME	Extract the conditional modes of random effects of an LmME model
ranef.tramME	Point estimates and conditional variances of random effects.
residuals.LmME	Residuals of a LmME model
residuals.tramME	Residuals of a tramME model
Resp	Response objects
sigma.LmME	Extract the SD of the error term of an LmME model.
simulate.tramME	Simulate from a 'tramME' model
smooth_terms	Extract and evaluate the smooth terms of a tramME model
smooth_terms.LmME	Evaluate smooth terms of a 'LmME' model.
smooth_terms.tramME	Extract and evaluate the smooth terms of a tramME model
summary.tramME	Summary method for tramME model
SurvregME	Mixed-effects Additive Parametric Survival Models
tramME	Mixed-effects Additive transformation models
tramTMB	Create a tramTMB object
VarCorr	Variances and correlation matrices of random effects
VarCorr.LmME	Variances and correlation matrices of random effects of an LmME object
VarCorr.tramME	Variances and correlation matrices of random effects
varcov	Generic method for 'varcov'
varcov.LmME	Extract the variance-covariance matrix of the random effects of an LmME model
varcov.tramME	Extract the variance-covariance matrix of the random effects
varcov<-	Generic method for '"varcov<-"'
varcov<-.tramME	Set the values of the random effects covariance matrices of a tramME model.
variable.names.tramME	Return variable names.
vcov.LmME	Get the variance-covariance matrix of the parameters of an LmME model
vcov.tramME	Calculate the variance-covariance matrix of the parameters
[.Resp	Response objects