Bayesian Logistic Regression for Oncology Dose-Escalation Trials

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Documentation for package ‘OncoBayes2’ version 0.8-9

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

bind_rows_0	Bind rows of multiple data frames with zero fill
blrm_exnex	Bayesian Logistic Regression Model for N-compounds with EXNEX
blrm_formula_linear	Build a BLRM formula with linear interaction term in logit-space
blrm_formula_saturating	Build a BLRM formula with saturating interaction term in logit-space
blrm_trial	Dose-Escalation Trials guided by Bayesian Logistic Regression Model
codata_combo2	Dataset: historical and concurrent data on a two-way combination
critical_quantile	Critical quantile
critical_quantile.blrmfit	Critical quantile
critical_quantile.blrm_trial	Critical quantile
diagnostic-quantities	Extract Diagnostic Quantities of 'OncoBayes2' Models
dose_info_combo2	Dataset: trial dose information for a dual-agent combination study
drug_info_combo2	Dataset: drug information for a dual-agent combination study
example-combo2	Two-drug combination example
example-combo2_trial	Two-drug combination example using BLRM Trial
example-combo3	Three-drug combination example
example-single-agent	Single Agent Example
example_model	Runs example models
hist_combo2	Dataset: historical data on two single-agents to inform a combination study
hist_combo3	Dataset: historical and concurrent data on a three-way combination
hist_SA	Single-agent example
inv_logit	Logit (log-odds) and inverse-logit function.
lodds	Logit (log-odds) and inverse-logit function.
logit	Logit (log-odds) and inverse-logit function.
log_posterior	Extract Diagnostic Quantities of 'OncoBayes2' Models
log_posterior.blrmfit	Extract Diagnostic Quantities of 'OncoBayes2' Models
neff_ratio	Extract Diagnostic Quantities of 'OncoBayes2' Models
neff_ratio.blrmfit	Extract Diagnostic Quantities of 'OncoBayes2' Models
nsamples	Return the number of posterior samples
nsamples.blrmfit	Return the number of posterior samples
nuts_params	Extract Diagnostic Quantities of 'OncoBayes2' Models
nuts_params.blrmfit	Extract Diagnostic Quantities of 'OncoBayes2' Models
OncoBayes2	OncoBayes2
plot_blrm	Plot a fitted model
plot_toxicity_curve	Plot a fitted model
plot_toxicity_curve.blrmfit	Plot a fitted model
plot_toxicity_curve.blrm_trial	Plot a fitted model
plot_toxicity_intervals	Plot a fitted model
plot_toxicity_intervals.blrmfit	Plot a fitted model
plot_toxicity_intervals.blrm_trial	Plot a fitted model
plot_toxicity_intervals_stacked	Plot a fitted model
plot_toxicity_intervals_stacked.blrmfit	Plot a fitted model
plot_toxicity_intervals_stacked.blrm_trial	Plot a fitted model
posterior_interval	Posterior intervals
posterior_interval.blrmfit	Posterior intervals
posterior_linpred	Posterior of linear predictor
posterior_linpred.blrmfit	Posterior of linear predictor
posterior_predict	Posterior of predictive
posterior_predict.blrmfit	Posterior of predictive
predictive_interval	Posterior predictive intervals
predictive_interval.blrmfit	Posterior predictive intervals
print.blrmfit	Bayesian Logistic Regression Model for N-compounds with EXNEX
print.blrm_trial	Dose-Escalation Trials guided by Bayesian Logistic Regression Model
prior_summary	Summarise model prior
prior_summary.blrmfit	Summarise model prior
rhat	Extract Diagnostic Quantities of 'OncoBayes2' Models
rhat.blrmfit	Extract Diagnostic Quantities of 'OncoBayes2' Models
summary.blrmfit	Summarise model results
summary.blrm_trial	Summarise trial
update.blrmfit	Update data of a BLRM analysis
update.blrm_trial	Update data and/or prior of a BLRM trial