assemble |
Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
barplot-method |
Class '"plasma"' |
combineAllWeights |
Class '"CombinedWeights"' |
CombinedWeights |
Class '"CombinedWeights"' |
CombinedWeights-class |
Class '"CombinedWeights"' |
Contribution |
Class '"Contribution"' |
Contribution-class |
Class '"Contribution"' |
fitCoxModels |
Class '"MultiplePLSCoxModels"' |
fitSingleModel |
Class '"SingleModel"' |
getAllWeights |
Class '"Contribution"' |
getCompositeWeights |
Class '"Contribution"' |
getFinalWeights |
Class '"Contribution"' |
getSizes |
Class '"MultiplePLSCoxModels"' |
getTop |
Class '"Contribution"' |
heat |
Class '"Contribution"' |
heat-method |
Class '"Contribution"' |
image-method |
Class '"Contribution"' |
image-method |
Class '"CombinedWeights"' |
interpret |
Class '"CombinedWeights"' |
loadESCAdata |
Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
loadLUSCdata |
Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
m450info |
Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
meanModeImputer |
Imputation |
mirESCA |
ESCA type data |
MultiOmics |
Class '"MultiOmics"' |
MultiOmics-class |
Class '"MultiOmics"' |
MultiplePLSCoxModels |
Class '"MultiplePLSCoxModels"' |
MultiplePLSCoxModels-class |
Class '"MultiplePLSCoxModels"' |
Outcome |
Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
pickSignificant |
Class '"Contribution"' |
plasma |
Class '"plasma"' |
plasma-class |
Class '"plasma"' |
plasmaEnv |
Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
plasmaPredictions |
Class '"plasmaPredictions"' |
plasmaPredictions-class |
Class '"plasmaPredictions"' |
plot-method |
Class '"MultiOmics"' |
plot-method |
Class '"SingleModel"' |
plot-method |
Class '"MultiplePLSCoxModels"' |
plot-method |
Class '"plasma"' |
plot-method |
Class '"plasmaPredictions"' |
predict-method |
Class '"SingleModel"' |
predict-method |
Class '"MultiplePLSCoxModels"' |
predict-method |
Class '"plasma"' |
prepareMultiOmics |
Class '"MultiOmics"' |
samplingImputer |
Imputation |
SingleModel-class |
Class '"SingleModel"' |
stdize |
Class '"CombinedWeights"' |
summary-method |
Class '"MultiOmics"' |
summary-method |
Class '"SingleModel"' |
summary-method |
Class '"MultiplePLSCoxModels"' |
summary-method |
Class '"plasma"' |
summary-method |
Class '"Contribution"' |
summary-method |
Class '"CombinedWeights"' |
TCGA-ESCA |
Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
TCGA-LUSC |
Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
tfESCA |
ESCA type data |
validMultiOmics |
Class '"MultiOmics"' |
validMultipleCoxModels |
Class '"MultiplePLSCoxModels"' |
[-method |
Class '"MultiOmics"' |
[-method |
Class '"MultiplePLSCoxModels"' |
[-method |
Class '"Contribution"' |