Annotation |
Annotation track constructors |
browsePlot |
R Genome browser |
crossable-class |
Class '"crossable"' |
draw.bg |
Background for track plots |
draw.boxes |
Boxes plot of a track |
draw.density |
Two-dimensional density plot of a track |
draw.hist |
Histogram plot of a track |
draw.pileup |
Pileup plot of a BAM track |
draw.points |
Scatter plot of a track |
draw.seq |
Plot a sequence of nucleotides |
draw.steps |
Stairway plot of a track |
drawable-class |
Class '"drawable"' |
drawable.list |
Drawable list constructor |
drawable.list-class |
Class '"drawable.list"' |
findDrawables |
Find drawable objects in memory |
handle |
Tk interface utilities |
hsBands |
Homo sapiens GRCh37 chromosome banding |
hsGenes |
Subset of Homo sapiens GRCh37 genes |
istrack |
Extract elements within a genomic window |
read.gtf |
Parses a GTF2 file |
readRDT |
Single refTable object storage |
refTable |
refTable class constructor |
refTable-class |
Class '"refTable"' |
saveRDT |
Single refTable object storage |
segMerge |
Merges consecutive segments |
segOverlap |
Merges overlapping segments |
singlePlot |
Whole genome plot of a drawable list |
sizetrack |
Extract elements within a genomic window |
sliceable-class |
Class '"sliceable"' |
subtrack |
Extract elements within a genomic window |
tk.browse |
R Genome browser |
tk.convert |
RDT file conversion |
tk.file |
Tk interface utilities |
tk.files |
Tk interface utilities |
tk.folder |
Tk interface utilities |
tk.tracks |
Track management for Genome browser |
track-constructors |
Track constructors |
track.bam |
Track constructors |
track.bam-class |
Class '"track.bam"' |
track.bands |
Track constructors |
track.bands-class |
Class '"track.bands"' |
track.bands.UCSC |
Annotation track constructors |
track.CNV |
Track constructors |
track.CNV-class |
Class '"track.CNV"' |
track.CNV.DGV |
Annotation track constructors |
track.exons |
Track constructors |
track.exons-class |
Class '"track.exons"' |
track.exons.CCDS |
Annotation track constructors |
track.exons.GENCODE |
Annotation track constructors |
track.fasta-class |
Class '"track.fasta"' |
track.fasta-constructors |
Track constructors for FASTA files |
track.fasta.collection |
Track constructors for FASTA files |
track.fasta.multi |
Track constructors for FASTA files |
track.genes |
Track constructors |
track.genes-class |
Class '"track.genes"' |
track.genes.NCBI |
Annotation track constructors |
track.table |
Track constructors |
track.table-class |
Class '"track.table"' |
track.table.GTF |
Annotation track constructors |
yline |
Compute Y line to avoid collision |