Tools to Create, Use, and Convert ecocomDP Data

Documentation for package ‘ecocomDP’ version 1.3.1

Help Pages

annotation_dictionary	Annotations of published data
ants_L0_flat	Joined and flat version of EDI data package knb-lter-hfr.118.33
ants_L1	The ecocomDP (L1) version of EDI data package knb-lter-hfr.118.33
calc_geo_extent_bounding_box_m2	Calculate geo_extent_bounding_box_m2 for the dataset_summary table
calc_length_of_survey_years	Calculate length_of_survey_years for the dataset_summary table
calc_number_of_years_sampled	Calculate number_of_years_sampled for the dataset_summary table
calc_std_dev_interval_betw_years	Calculate std_dev_interval_betw_years for the dataset_summary table
convert_to_dwca	Convert a dataset to the Darwin Core Archive format
create_dataset_summary	Create the dataset_summary table
create_eml	Create EML metadata
create_location	Create the location table
create_location_ancillary	Create the location_ancillary table
create_observation	Create the observation table
create_observation_ancillary	Create the observation_ancillary table
create_taxon	Create the taxon table
create_taxon_ancillary	Create the taxon_ancillary table
create_variable_mapping	Create the variable_mapping table
flatten_data	Flatten a dataset
plot_sample_space_time	Plot dates and times samples were collected or observations were made
plot_sites	Plot sites on US map
plot_taxa_abund	Plot mean taxa abundances per 'observation_id'
plot_taxa_accum_sites	Plot taxa accumulation by site accumulation
plot_taxa_accum_time	Plot taxa accumulation through time
plot_taxa_diversity	Plot diversity (taxa richness) through time
plot_taxa_occur_freq	Plot taxon occurrence frequencies
plot_taxa_rank	Plot taxa ranks
plot_taxa_shared_sites	Plot number of unique taxa shared across sites
read_data	Read published data
save_data	Save a dataset
search_data	Search published data
validate_data	Validate tables against the model
write_tables	Write tables to file