Loading NONMEM Output Files with Functions for Visual Predictive Checks (VPC) and Goodness of Fit (GOF) Plots

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Documentation for package ‘nonmem2R’ version 0.2.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add.caption	Add caption to ggplot object
basic.eta.GOF	Histogram and/or QQ-norm GOF for ETA's
basic.GOF4	Basic 4- and 6-panel GOF
basic.GOF6	Basic 4- and 6-panel GOF
covload	Load the covariance matrix from a nonmem .cov output file.
default.GOF.dictionary	Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
default.GOF.params	Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
do.cat.GOF	Y vs categorical X GOF-plot
do.individual.GOF	Individual GOF-plots
do.multi.GOF	Multiple Y vs single X GOF-plot
do.one.GOF	X-Y GOF-plot
eta.cat.GOF	Covariate and pairs ETA GOFs
eta.cov.GOF	Covariate and pairs ETA GOFs
eta.hist.GOF	Histogram and/or QQ-norm GOF for ETA's
eta.pairs.GOF	Covariate and pairs ETA GOFs
eta.qqnorm.GOF	Histogram and/or QQ-norm GOF for ETA's
extload	Load final parameter values from a nonmem .ext output file.
extToTable	Compile parameter table suitable for reports
get.GOF.dictionary	Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
get.GOF.params	Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
get.label	Labels for known NONMEM variables
get.model.path	Get and set model.path
GOF.control	Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
grid.sim	Combine fix grid and simulated grid based on multivariate normal distribution
histGOF	Histogram GOF
merge2GOF	Merging 2, 4, or 6 GOF's into one graph
merge4GOF	Merging 2, 4, or 6 GOF's into one graph
merge6GOF	Merging 2, 4, or 6 GOF's into one graph
modload	Show model file
position_scale	Position for scaling y
qqnormGOF	QQ-norm GOF
set.ETA.labels	Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
set.GOF.dictionary	Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
set.GOF.params	Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
set.model.path	Get and set model.path
set.script.name	Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
stat_corr	Adding correlation to x-y plots
stat_denx	Density for x in x-y plot
stat_dnorm	Normal density
stat_hmean	Horizontal reference at mean
stat_hmedian	Horizontal reference at median
sumoR	Compile summary information for NONMEM model based on the lst file, ext file, and the cov file.
test.grid.sim	Function for testing grid.sim and compare with rmvnorm
vpcfig	Visual Predictive Check (VPC) based on Perl-speaks-NONMEM (PsN) generated VPC files (lattice version).
vpcfig2	Visual Predictive Check (VPC) based on Perl-speaks-NONMEM (PsN) generated VPC files (ggplot2-version).
vpcfig3	Visual Predictive Check (VPC) based on raw Perl-speaks-NONMEM (PsN) generated VPC files.