Differential Pattern Analysis via Linear Modeling


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Documentation for package ‘DiPALM’ version 1.1

Help Pages

DiPALM-package DiPALM - Differential Pattern Analysis via Linear Modeling :
AdjustPvalue Determine p-values based on permutation test results :
BlankPlot Generate a blank plot window :
BuildLimmaLM Fit linear models to time-course expression patterns using the limma package :
BuildModMembership Calculate module membership (kME) for all genes in a time-course data set :
DiPALM DiPALM - Differential Pattern Analysis via Linear Modeling :
exampleData Example Data: Data for use with the DiPALM vignette :
ggPlotMultiDensities Plot multiple density distributions :
PlotTCs Plot multiple time-course expression patterns for one gene :
PlotTCsRibbon Plot multiple averaged time-course expression patterns for a group of genes :
testData Test Data: Data for function testing :