Manipulation of Matched Phylogenies and Data using 'data.table'


[Up] [Top]

Documentation for package ‘treedata.table’ version 0.1.0

Help Pages

anolis Anole data
as.treedata.table Combine tree (or set of trees) and data.frame into a single treedata.table object
detectAllCharacters Apply detectCharacterType over an entire matrix
detectCharacterType Function to detect whether a character is continuous or discrete
droptreedata.table Function dropping taxa from an object of class 'treedata.table'
extractVector Returning a named vector from a treedata.table object
filterMatrix Filter a character matrix, returning either all continuous or all discrete characters
forceNames Force names for rows, columns, or both
hasNames Row and column name check
head.treedata.table Return the first part of an treedata.table object
print.treedata.table Print method treedata.table objects
pulltreedata.table Returns the character matrix or phylogeny from a treedata.table object
summary.treedata.table Summarizing treedata.table objects
tail.treedata.table Return the last part of an treedata.table object
tdt Run a function on a 'treedata.table' object
[.treedata.table Function for performing data.table operations on an object of class 'treedata.table'
[[.treedata.table Function for extract a named vector from an object of class 'treedata.table'