| add.summary |
Summary statistics and plot methods for runjags class objects |
| as.jags |
The runjags class and available S3 methods |
| as.jags.default |
The runjags class and available S3 methods |
| as.jags.runjags |
The runjags class and available S3 methods |
| as.mcmc.list.runjags |
The runjags class and available S3 methods |
| as.mcmc.runjags |
The runjags class and available S3 methods |
| as.runjags |
The runjags class and available S3 methods |
| as.runjags.default |
The runjags class and available S3 methods |
| as.runjags.jags |
The runjags class and available S3 methods |
| ask |
Obtain Input from User With Error Handling |
| autoextend.JAGS |
Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics |
| autoextend.jags |
Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics |
| autorun.JAGS |
Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics |
| autorun.jags |
Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics |
| cleanup.JAGS |
The runjags class and available S3 methods |
| cleanup.jags |
The runjags class and available S3 methods |
| combine.JAGS |
Combining and dividing runjags and MCMC objects |
| combine.jags |
Combining and dividing runjags and MCMC objects |
| combine.MCMC |
Combining and dividing runjags and MCMC objects |
| combine.mcmc |
Combining and dividing runjags and MCMC objects |
| contrasts.MCMC |
Mutate functions to be used with runjags summary methods |
| contrasts.mcmc |
Mutate functions to be used with runjags summary methods |
| dic.runjags |
Extract peripheral information from runjags objects |
| divide.JAGS |
Combining and dividing runjags and MCMC objects |
| divide.jags |
Combining and dividing runjags and MCMC objects |
| drop.k |
Drop-k and simulated dataset studies using JAGS |
| drop.k.JAGS |
Drop-k and simulated dataset studies using JAGS |
| drop.k.jags |
Drop-k and simulated dataset studies using JAGS |
| dump.format |
Conversion Between a Named List and a Character String in the R Dump Format |
| dump.list.format |
Conversion Between a Named List and a Character String in the R Dump Format |
| extend.JAGS |
Run or extend a user-specified Bayesian MCMC model in JAGS from within R |
| extend.jags |
Run or extend a user-specified Bayesian MCMC model in JAGS from within R |
| extract |
Extract peripheral information from runjags objects |
| extract.jags |
Extract peripheral information from runjags objects |
| extract.runjags |
Extract peripheral information from runjags objects |
| failed.JAGS |
The runjags class and available S3 methods |
| failed.jags |
The runjags class and available S3 methods |
| failedjags |
The runjags class and available S3 methods |
| findJAGS |
Attempt to Locate a JAGS Install |
| findjags |
Attempt to Locate a JAGS Install |
| fitted.runjags |
The runjags class and available S3 methods |
| is.runjags |
The runjags class and available S3 methods |
| list.format |
Conversion Between a Named List and a Character String in the R Dump Format |
| load.runJAGSmodule |
Load the internal JAGS module provided by runjags |
| load.runjagsmodule |
Load the internal JAGS module provided by runjags |
| mutate.functions |
Mutate functions to be used with runjags summary methods |
| new_unique |
Create a Unique Filename |
| plot.runjags |
Summary statistics and plot methods for runjags class objects |
| plot.runjagsplots |
Summary statistics and plot methods for runjags class objects |
| plot.runjagsstudy |
Print methods for runjags helper classes |
| prec2sd |
Mutate functions to be used with runjags summary methods |
| predict.runjags |
The runjags class and available S3 methods |
| print.crosscorrstats |
Print methods for runjags helper classes |
| print.dicstats |
Print methods for runjags helper classes |
| print.failedjags |
Print methods for runjags helper classes |
| print.gelman.with.target |
Print methods for runjags helper classes |
| print.gelmanwithtarget |
Print methods for runjags helper classes |
| print.mcsestats |
Print methods for runjags helper classes |
| print.rjagsoutput |
Print methods for runjags helper classes |
| print.runjags |
Summary statistics and plot methods for runjags class objects |
| print.runjagsbginfo |
Print methods for runjags helper classes |
| print.runjagsdata |
Print methods for runjags helper classes |
| print.runjagsinits |
Print methods for runjags helper classes |
| print.runjagsmodel |
Print methods for runjags helper classes |
| print.runjagsoutput |
Print methods for runjags helper classes |
| print.runjagsplots |
Summary statistics and plot methods for runjags class objects |
| print.runjagsstudy |
Print methods for runjags helper classes |
| read.JAGSfile |
Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile |
| read.jagsfile |
Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile |
| read.WinBUGS |
Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile |
| read.winbugs |
Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile |
| residuals.runjags |
The runjags class and available S3 methods |
| results.JAGS |
Importing of saved JAGS simulations with partial error recovery |
| results.jags |
Importing of saved JAGS simulations with partial error recovery |
| run.JAGS |
Run or extend a user-specified Bayesian MCMC model in JAGS from within R |
| run.jags |
Run or extend a user-specified Bayesian MCMC model in JAGS from within R |
| run.JAGS.study |
Drop-k and simulated dataset studies using JAGS |
| run.jags.study |
Drop-k and simulated dataset studies using JAGS |
| runjags-class |
The runjags class and available S3 methods |
| runJAGS.getOption |
Options for the runjags package |
| runjags.getOption |
Options for the runjags package |
| runJAGS.options |
Options for the runjags package |
| runjags.options |
Options for the runjags package |
| runjags.printmethods |
Print methods for runjags helper classes |
| runjagsclass |
The runjags class and available S3 methods |
| runjagsstudy-class |
The runjags class and available S3 methods |
| runjagsstudyclass |
The runjags class and available S3 methods |
| summary.runjags |
Summary statistics and plot methods for runjags class objects |
| summary.runjagsstudy |
Print methods for runjags helper classes |
| template.JAGS |
Generate a generalised linear mixed model (GLMM) specification in JAGS |
| template.jags |
Generate a generalised linear mixed model (GLMM) specification in JAGS |
| template_huiwalter |
Create a Hui-Walter model based on paired test data for an arbitrary number of tests and populations |
| testJAGS |
Analyse the System to Check That JAGS Is Installed |
| testjags |
Analyse the System to Check That JAGS Is Installed |
| timestring |
Calculate the Elapsed Time in Sensible Units |
| unload.runJAGSmodule |
Load the internal JAGS module provided by runjags |
| unload.runjagsmodule |
Load the internal JAGS module provided by runjags |
| write.JAGSfile |
Write a complete JAGS model to a text file |
| write.jagsfile |
Write a complete JAGS model to a text file |
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