Sum of Single Effects Linear Regression

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Documentation for package ‘susieR’ version 0.12.35

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

coef.susie	Extract regression coefficients from susie fit
compute_ss	Compute sufficient statistics for input to 'susie_suff_stat'
compute_suff_stat	Compute sufficient statistics for input to 'susie_suff_stat'
estimate_s_rss	Estimate s in 'susie_rss' Model Using Regularized LD
FinemappingConvergence	Simulated Fine-mapping Data with Convergence Problem.
get_cs_correlation	Get Correlations Between CSs, using Variable with Maximum PIP From Each CS
kriging_rss	Compute Distribution of z-scores of Variant j Given Other z-scores, and Detect Possible Allele Switch Issue
N2finemapping	Simulated Fine-mapping Data with Two Effect Variables
N3finemapping	Simulated Fine-mapping Data with Three Effect Variables.
predict.susie	Predict outcomes or extract coefficients from susie fit.
print.summary.susie	Summarize Susie Fit.
summary.susie	Summarize Susie Fit.
SummaryConsistency	Simulated Fine-mapping Data with LD matrix From Reference Panel.
susie	Sum of Single Effects (SuSiE) Regression
susie_auto	Attempt at Automating SuSiE for Hard Problems
susie_get_cs	Inferences From Fitted SuSiE Model
susie_get_lfsr	Inferences From Fitted SuSiE Model
susie_get_niter	Inferences From Fitted SuSiE Model
susie_get_objective	Inferences From Fitted SuSiE Model
susie_get_pip	Inferences From Fitted SuSiE Model
susie_get_posterior_mean	Inferences From Fitted SuSiE Model
susie_get_posterior_samples	Inferences From Fitted SuSiE Model
susie_get_posterior_sd	Inferences From Fitted SuSiE Model
susie_get_prior_variance	Inferences From Fitted SuSiE Model
susie_get_residual_variance	Inferences From Fitted SuSiE Model
susie_init_coef	Initialize a susie object using regression coefficients
susie_plot	SuSiE Plots.
susie_plot_changepoint	Plot changepoint data and susie fit using ggplot2
susie_plot_iteration	SuSiE Plots.
susie_rss	Sum of Single Effects (SuSiE) Regression using Summary Statistics
susie_suff_stat	Sum of Single Effects (SuSiE) Regression
susie_trendfilter	Apply susie to trend filtering (especially changepoint problems), a type of non-parametric regression.
univariate_regression	Perform Univariate Linear Regression Separately for Columns of X