Draw Ordered Oxford Grids and Chord Diagrams

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Documentation for package ‘macrosyntR’ version 0.3.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

compute_linkage_groups	Compute Linkage groups
compute_macrosynteny	Compute significant macrosynteny blocks
get_syntenic_genes	get the syntenic genes as a table
load_orthologs	load orthologs with their genomic coordinates.
plot_chord_diagram	plot the Macro-synteny as a chord diagram
plot_macrosynteny	Plot Macro-synteny
plot_oxford_grid	plot the Macro-synteny as an oxford grid.
reorder_macrosynteny	Reorder the mbh_df before plotting
reorder_multiple_macrosyntenies	Reorder the chromosomes of two or more species before plotting
reverse_species_order	Reverse order of the species in an orthologs_df.
subset_linkage_orthologs	Subset Orthologs contained in conserved linkage groups