Categorical Analysis of Neo- And Paleo-Endemism


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Documentation for package ‘canaper’ version 1.0.1

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acacia _Acacia_ example data
biod_example Biodiverse example data
biod_results Output from Biodiverse
cpr_classify_endem Classify phylogenetic endemism
cpr_classify_signif Classify statistical significance
cpr_endem_cols CVD-friendly color palette for plotting results of CANAPE
cpr_endem_cols_2 CVD-friendly color palette for plotting results of CANAPE, version 2
cpr_endem_cols_3 CVD-friendly color palette for plotting results of CANAPE, version 3
cpr_endem_cols_4 CVD-friendly color palette for plotting results of CANAPE, version 4
cpr_iter_sim Simulate the number of iterations needed to generate a random community that is sufficiently different from the original community
cpr_make_pal Make a palette of colors for plotting CANAPE results
cpr_rand_comm Randomize a single community matrix
cpr_rand_test Run a randomization analysis for one or more biodiversity metrics
cpr_signif_cols CVD-friendly color palette for plotting results of randomization test
cpr_signif_cols_2 CVD-friendly color palette for plotting results of randomization test, version 2
mishler_endem_cols Original color palette for plotting results of CANAPE
mishler_signif_cols Original color palette for plotting results of CANAPE
phylocom Phylocom example data