Categorical Analysis of Neo- And Paleo-Endemism

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Documentation for package ‘canaper’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

acacia	_Acacia_ example data
biod_example	Biodiverse example data
biod_results	Output from Biodiverse
cpr_classify_endem	Classify phylogenetic endemism
cpr_classify_signif	Classify statistical significance
cpr_endem_cols	CVD-friendly color palette for plotting results of CANAPE
cpr_endem_cols_2	CVD-friendly color palette for plotting results of CANAPE, version 2
cpr_endem_cols_3	CVD-friendly color palette for plotting results of CANAPE, version 3
cpr_endem_cols_4	CVD-friendly color palette for plotting results of CANAPE, version 4
cpr_iter_sim	Simulate the number of iterations needed to generate a random community that is sufficiently different from the original community
cpr_make_pal	Make a palette of colors for plotting CANAPE results
cpr_rand_comm	Randomize a single community matrix
cpr_rand_test	Run a randomization analysis for one or more biodiversity metrics
cpr_signif_cols	CVD-friendly color palette for plotting results of randomization test
cpr_signif_cols_2	CVD-friendly color palette for plotting results of randomization test, version 2
mishler_endem_cols	Original color palette for plotting results of CANAPE
mishler_signif_cols	Original color palette for plotting results of CANAPE
phylocom	Phylocom example data