Tidy Data and 'Geoms' for Bayesian Models

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Documentation for package ‘tidybayes’ version 3.0.6

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A C D E F G H L M N P R S T U X

tidybayes-package

Tidy Data and 'Geoms' for Bayesian Models

-- A --

add_draws	Add draws to a data frame in tidy format
add_epred_draws	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
add_epred_rvars	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
add_fitted_draws	Deprecated functions, arguments, and column names in tidybayes
add_fitted_samples	Deprecated functions, arguments, and column names in tidybayes
add_linpred_draws	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
add_linpred_rvars	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
add_predicted_draws	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
add_predicted_rvars	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
add_predicted_samples	Deprecated functions, arguments, and column names in tidybayes
add_residual_draws	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
apply_prototypes	Decorate a model fit or sample with data types recovered from the input data
as_data_list	Data lists for input into Bayesian models
as_data_list.character	Data lists for input into Bayesian models
as_data_list.data.frame	Data lists for input into Bayesian models
as_data_list.data_list	Data lists for input into Bayesian models
as_data_list.default	Data lists for input into Bayesian models
as_data_list.factor	Data lists for input into Bayesian models
as_data_list.list	Data lists for input into Bayesian models
as_data_list.logical	Data lists for input into Bayesian models
as_data_list.numeric	Data lists for input into Bayesian models
as_sample_data_frame	Deprecated functions, arguments, and column names in tidybayes
as_sample_tibble	Deprecated functions, arguments, and column names in tidybayes

-- C --

combine_chains	Combine the chain and iteration columns of tidy data frames of draws
compare_levels	Compare the value of draws of some variable from a Bayesian model for different levels of a factor
compose_data	Compose data for input into a Bayesian model

-- D --

data_list	Data lists for input into Bayesian models
density_bins	Density bins and histogram bins as data frames

-- E --

emmeans_comparison	Use emmeans contrast methods with compare_levels
epred_draws	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
epred_draws.brmsfit	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
epred_draws.default	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
epred_draws.stanreg	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
epred_rvars	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
epred_rvars.brmsfit	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
epred_rvars.default	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
epred_rvars.stanreg	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
extract_samples	Deprecated functions, arguments, and column names in tidybayes

-- F --

fitted_draws	Deprecated functions, arguments, and column names in tidybayes
fitted_draws.default	Deprecated functions, arguments, and column names in tidybayes
fitted_samples	Deprecated functions, arguments, and column names in tidybayes

-- G --

gather_draws	Extract draws of variables in a Bayesian model fit into a tidy data format
gather_emmeans_draws	Extract a tidy data frame of draws of posterior distributions of "estimated marginal means" (emmeans/lsmeans) from a Bayesian model fit.
gather_emmeans_draws.default	Extract a tidy data frame of draws of posterior distributions of "estimated marginal means" (emmeans/lsmeans) from a Bayesian model fit.
gather_emmeans_draws.emm_list	Extract a tidy data frame of draws of posterior distributions of "estimated marginal means" (emmeans/lsmeans) from a Bayesian model fit.
gather_emmeans_samples	Deprecated functions, arguments, and column names in tidybayes
gather_lsmeans_samples	Deprecated functions, arguments, and column names in tidybayes
gather_pairs	Gather pairwise combinations of values from key/value columns in a long-format data frame
gather_rvars	Extract draws from a Bayesian model into tidy data frames of random variables
gather_samples	Deprecated functions, arguments, and column names in tidybayes
gather_terms	Deprecated functions, arguments, and column names in tidybayes
gather_variables	Gather variables from a tidy data frame of draws from variables into a single column
GeomIntervalh	Deprecated functions, arguments, and column names in tidybayes
GeomPointintervalh	Deprecated functions, arguments, and column names in tidybayes
geom_dotsh	Deprecated functions, arguments, and column names in tidybayes
geom_dotsintervalh	Deprecated functions, arguments, and column names in tidybayes
geom_eye	Deprecated functions, arguments, and column names in tidybayes
geom_eyeh	Deprecated functions, arguments, and column names in tidybayes
geom_halfeyeh	Deprecated functions, arguments, and column names in tidybayes
geom_intervalh	Deprecated functions, arguments, and column names in tidybayes
geom_pointintervalh	Deprecated functions, arguments, and column names in tidybayes
geom_slabh	Deprecated functions, arguments, and column names in tidybayes
get_variables	Get the names of the variables in a fitted Bayesian model
get_variables.default	Get the names of the variables in a fitted Bayesian model
get_variables.mcmc	Get the names of the variables in a fitted Bayesian model
get_variables.mcmc.list	Get the names of the variables in a fitted Bayesian model
ggeye	Deprecated functions, arguments, and column names in tidybayes

-- H --

histogram_bins

Density bins and histogram bins as data frames

-- L --

linpred_draws	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
linpred_draws.brmsfit	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
linpred_draws.default	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
linpred_draws.stanreg	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
linpred_rvars	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
linpred_rvars.brmsfit	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
linpred_rvars.default	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
linpred_rvars.stanreg	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame

-- M --

mean_hdcih	Deprecated functions, arguments, and column names in tidybayes
mean_hdih	Deprecated functions, arguments, and column names in tidybayes
mean_qih	Deprecated functions, arguments, and column names in tidybayes
median_hdcih	Deprecated functions, arguments, and column names in tidybayes
median_hdih	Deprecated functions, arguments, and column names in tidybayes
median_qih	Deprecated functions, arguments, and column names in tidybayes
mode_hdcih	Deprecated functions, arguments, and column names in tidybayes
mode_hdih	Deprecated functions, arguments, and column names in tidybayes
mode_qih	Deprecated functions, arguments, and column names in tidybayes

-- N --

nest_rvars	Nest and unnest 'rvar' columns in data frames
n_prefix	Prefix function generator for composing dimension index columns

-- P --

parameters	Deprecated functions, arguments, and column names in tidybayes
point_intervalh	Deprecated functions, arguments, and column names in tidybayes
predicted_draws	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
predicted_draws.brmsfit	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
predicted_draws.default	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
predicted_draws.stanreg	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
predicted_rvars	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
predicted_rvars.brmsfit	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
predicted_rvars.default	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
predicted_rvars.stanreg	Add 'rvar's for the linear predictor, posterior expectation, posterior predictive, or residuals of a model to a data frame
predicted_samples	Deprecated functions, arguments, and column names in tidybayes
predict_curve	Deprecated: Prediction curves for arbitrary functions of posteriors
predict_curve_density	Deprecated: Prediction curves for arbitrary functions of posteriors

-- R --

recover_types	Decorate a model fit or sample with data types recovered from the input data
residual_draws	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
residual_draws.brmsfit	Add draws from the posterior fit, predictions, or residuals of a model to a data frame
residual_draws.default	Add draws from the posterior fit, predictions, or residuals of a model to a data frame

-- S --

sample_draws	Sample draws from a tidy-format data frame of draws
spread_draws	Extract draws of variables in a Bayesian model fit into a tidy data format
spread_rvars	Extract draws from a Bayesian model into tidy data frames of random variables
spread_samples	Deprecated functions, arguments, and column names in tidybayes
stat_ccdfintervalh	Deprecated functions, arguments, and column names in tidybayes
stat_cdfintervalh	Deprecated functions, arguments, and column names in tidybayes
stat_dist_ccdfintervalh	Deprecated functions, arguments, and column names in tidybayes
stat_dist_cdfintervalh	Deprecated functions, arguments, and column names in tidybayes
stat_dist_dotsh	Deprecated functions, arguments, and column names in tidybayes
stat_dist_dotsintervalh	Deprecated functions, arguments, and column names in tidybayes
stat_dist_eyeh	Deprecated functions, arguments, and column names in tidybayes
stat_dist_gradientintervalh	Deprecated functions, arguments, and column names in tidybayes
stat_dist_halfeyeh	Deprecated functions, arguments, and column names in tidybayes
stat_dist_intervalh	Deprecated functions, arguments, and column names in tidybayes
stat_dist_pointintervalh	Deprecated functions, arguments, and column names in tidybayes
stat_dist_slabh	Deprecated functions, arguments, and column names in tidybayes
stat_dotsh	Deprecated functions, arguments, and column names in tidybayes
stat_dotsintervalh	Deprecated functions, arguments, and column names in tidybayes
stat_eyeh	Deprecated functions, arguments, and column names in tidybayes
stat_gradientintervalh	Deprecated functions, arguments, and column names in tidybayes
stat_halfeyeh	Deprecated functions, arguments, and column names in tidybayes
stat_histintervalh	Deprecated functions, arguments, and column names in tidybayes
stat_intervalh	Deprecated functions, arguments, and column names in tidybayes
stat_pointintervalh	Deprecated functions, arguments, and column names in tidybayes
stat_slabh	Deprecated functions, arguments, and column names in tidybayes
summarise_draws.grouped_df	Summaries of draws in 'grouped_df' objects

-- T --

tidybayes	Tidy Data and 'Geoms' for Bayesian Models
tidybayes-deprecated	Deprecated functions, arguments, and column names in tidybayes
tidybayes-models	Models supported by tidybayes
tidy_draws	Get a sample of posterior draws from a model as a tibble
tidy_draws.brmsfit	Get a sample of posterior draws from a model as a tibble
tidy_draws.CmdStanFit	Get a sample of posterior draws from a model as a tibble
tidy_draws.CmdStanMCMC	Get a sample of posterior draws from a model as a tibble
tidy_draws.data.frame	Get a sample of posterior draws from a model as a tibble
tidy_draws.default	Get a sample of posterior draws from a model as a tibble
tidy_draws.draws	Get a sample of posterior draws from a model as a tibble
tidy_draws.jagsUI	Get a sample of posterior draws from a model as a tibble
tidy_draws.matrix	Get a sample of posterior draws from a model as a tibble
tidy_draws.mcmc.list	Get a sample of posterior draws from a model as a tibble
tidy_draws.MCMCglmm	Get a sample of posterior draws from a model as a tibble
tidy_draws.runjags	Get a sample of posterior draws from a model as a tibble
tidy_draws.stanfit	Get a sample of posterior draws from a model as a tibble
tidy_draws.stanreg	Get a sample of posterior draws from a model as a tibble
tidy_samples	Deprecated functions, arguments, and column names in tidybayes

-- U --

ungather_draws	Turn tidy data frames of variables from a Bayesian model back into untidy data
ungather_samples	Deprecated functions, arguments, and column names in tidybayes
unnest_rvars	Nest and unnest 'rvar' columns in data frames
unspread_draws	Turn tidy data frames of variables from a Bayesian model back into untidy data
unspread_samples	Deprecated functions, arguments, and column names in tidybayes

-- X --

x_at_y

Generate lookup vectors for composing nested indices