Inferring Cell-Specific Gene Regulatory Network

Documentation for package ‘inferCSN’ version 1.0.5

inferCSN-package	inferCSN: Inferring Cell-Specific Gene Regulatory Network
acc.calculate	ACC calculate
as_matrix	Attempts to turn a dgCMatrix into a dense matrix
auc.calculate	AUC value calculate
calculate.gene.rank	Calculate and rank TFs in network
check.parameters	Check input parameters
coef.SRM_fit	Extracts a specific solution in the regularization path
coef.SRM_fit_CV	Extracts a specific solution in the regularization path
example_ground_truth	Example ground truth data
example_matrix	Example matrix data
example_meta_data	Example meta data
filter_sort_matrix	Filter and sort matrix
inferCSN	Inferring Cell-Specific Gene Regulatory Network
inferCSN-method	Inferring Cell-Specific Gene Regulatory Network
model.fit	Fit a sparse regression model
network.heatmap	The heatmap of network
network_format	Format weight table
network_sift	network_sift
normalization	normalization
parallelize_fun	Apply function over a List or Vector
plot_contrast_networks	plot_contrast_networks
plot_dynamic_networks	plot_dynamic_networks
plot_scatter	plot_scatter
plot_static_networks	Plot of dynamic networks
predict.SRM_fit	Predict Response
predict.SRM_fit_CV	Predict Response
prepare.performance.data	prepare.performance.data
print.SRM_fit	Prints a summary of model.fit
print.SRM_fit_CV	Prints a summary of model.fit
rse	Relative Squared Error
r_square	R^2 (coefficient of determination)
single.network	Construct network for single gene
sparse.regression	Sparse regression model
sse	Sum of Squared Errors
table.to.matrix	Switch weight table to matrix