Microbe-Metabolite Interactions-Based Metabolic Profiles Predictor

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Documentation for package ‘MMINP’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

checkInputdata	Check if input data satisfies input conditions
compareFeatures	Compare features' abundance obtained by prediction and measurement.
filterFeatures	Filter features of input table according to prevalence and/or abundance
get_Components	Estimate components for O2-PLS method
get_cvo2mComponent	get components number from Cross-validate procedure of O2PLS
MMINP.predict	Predict metabolites from new microbiome samples using MMINP model.
MMINP.preprocess	Data Preprocessing function for MMINP
MMINP.train	Train MMINP model using paired microbial features and metabolites data
MMINP_trained_model	(Data) A MMINP model
print.mminp	Print function for MMINP.train
test_metab	(Data) Normalized metabolite abundances for MMINP prediction
test_metag	(Data) Normalized gene family abundances for MMINP prediction
train_metab	(Data) Normalized metabolite abundances for MMINP training
train_metag	(Data) Normalized gene family abundances for MMINP training